Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0230
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   2.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   8.1  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              21   8.1  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 405 SSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 289
           ++ +S A  AAAA   +T   +S R  ++  GN A   A
Sbjct: 125 TAASSAALAAAAAVDAATAGDKSCRYTASLAGNVAPASA 163


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +1

Query: 442 PLVQKHIYVH 471
           PL+QKH+ +H
Sbjct: 317 PLIQKHLKIH 326


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 501 TSSIPAVAPPQKHYKI 548
           T  I  +APP+K Y +
Sbjct: 99  TMKIKIIAPPEKKYSV 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,469
Number of Sequences: 438
Number of extensions: 2844
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)