Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0230
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23230.1 68414.m02906 expressed protein                             34   0.075
At5g28120.1 68418.m03396 hypothetical protein                          30   1.2  
At3g30816.1 68416.m03949 hypothetical protein                          30   1.6  
At2g06860.1 68415.m00768 Ulp1 protease family protein contains P...    30   1.6  
At5g13860.1 68418.m01620 tumour susceptibility gene 101 (TSG101)...    29   2.8  
At4g05300.1 68417.m00803 hypothetical protein                          29   3.8  
At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)...    28   5.0  
At5g28110.1 68418.m03395 hypothetical protein                          28   6.6  
At4g21900.1 68417.m03166 MATE efflux family protein similar to r...    28   6.6  
At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidops...    28   6.6  
At5g39080.1 68418.m04728 transferase family protein similar to a...    27   8.7  

>At1g23230.1 68414.m02906 expressed protein
          Length = 1615

 Score = 34.3 bits (75), Expect = 0.075
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = -1

Query: 474 YVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVS 322
           Y+N D FL      + + +SA E+S++   Q AAA  G S T ++S+  VS
Sbjct: 126 YINWDTFL----PSLLSSVSAAEASLSQGVQAAAATAGSSATSSQSVVPVS 172


>At5g28120.1 68418.m03396 hypothetical protein
          Length = 506

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = -1

Query: 447 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASR 295
           ++S R STRISA+E +  S        KGES T+    RR++  K +  +R
Sbjct: 342 EKSVRGSTRISASEHTQGSPIDAILPIKGES-TKNGVTRRITNGKVHGGNR 391


>At3g30816.1 68416.m03949 hypothetical protein
          Length = 342

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -1

Query: 447 KRSTRVSTRISATESSITSEAQTAAAAKGESTTE--TESIRRVSAAKGNAASRK 292
           K+S R STRISA+E +  S        KGEST    T  I      +GN  +++
Sbjct: 179 KKSVRGSTRISASEHTQGSPMDAILPIKGESTKNGVTRWITNGKVHRGNRWTKR 232


>At2g06860.1 68415.m00768 Ulp1 protease family protein contains Pfam
            profile PF02902: Ulp1 protease family, C-terminal
            catalytic domain
          Length = 938

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 444  RSTRVSTRISATESSITSEAQTAAAAKGESTT--ETESIRRVSAAKGNAASRK 292
            +S R STRISA+E +  S        KGEST     E+ RR    KG++   +
Sbjct: 843  KSVRGSTRISASEHTQGSPMDAILPVKGESTKNGHGETDRRSVRPKGDSTDNQ 895


>At5g13860.1 68418.m01620 tumour susceptibility gene 101 (TSG101)
           family protein similar to SP|Q99816 Tumor susceptibility
           gene 101 protein {Homo sapiens}; contains Pfam profile
           PF05743: Tumour susceptibility gene 101 protein (TSG101)
          Length = 368

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +2

Query: 14  PHRNISKVGVVLIGY*INYHRVSSKRISLVSSKHKMRAF---VVLACVAMAYGRPEPPVG 184
           PH N+S  G+V + Y  N+   SS  + L S  H   AF     L        +P P +G
Sbjct: 116 PHSNVSPSGLVSLPYLQNWIYPSSNLVDLAS--HLSAAFSRDPPLYSQRRPPPQPSPSIG 173

Query: 185 YSYSAP 202
             YS P
Sbjct: 174 SGYSRP 179


>At4g05300.1 68417.m00803 hypothetical protein
          Length = 387

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -1

Query: 447 KRSTRVSTRISATESSITSEAQTAAAAKGESTT--ETESIRRVSAAKGNAASRK 292
           ++S R STRISA+E +  S        KGEST     E+ +R    KG++   +
Sbjct: 301 EKSVRGSTRISASEHTQGSPMDAILPVKGESTKNGHGETDQRSVRPKGDSTDNQ 354


>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
           family protein low similarity to Swift [Xenopus laevis]
           GI:14164561; contains Pfam profiles PF00583:
           acetyltransferase, GNAT family, PF00533: BRCA1 C
           Terminus (BRCT) domain
          Length = 991

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 503 FLYPCCGSTPETLQDHLHQGPNSSHSYWPHNFYPTTKRREDTRI 634
           FL    G +   +QDHL   PN +H +  +  YP  K  ++  I
Sbjct: 865 FLTYANGKSAARIQDHLR--PNGAHRWHNYKTYPNIKELDEAAI 906


>At5g28110.1 68418.m03395 hypothetical protein
          Length = 493

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -1

Query: 447 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASR 295
           ++S R S RISA+E +  S        KGES T+    RR++  K +  +R
Sbjct: 342 EKSVRGSIRISASEHTQGSPIDAILPIKGES-TKNGVTRRITNGKVHGGNR 391


>At4g21900.1 68417.m03166 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           MatE
          Length = 1094

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = -1

Query: 432 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT 286
           VS+ IS  ESS+T+ A+  AAAKG+     + ++ + A  G +  R  T
Sbjct: 576 VSSGISPNESSVTAVAR-LAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 623


>At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidopsis
           thaliana, EMBL:AC007020
          Length = 745

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = -1

Query: 495 LNWFWGRYVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVS 322
           LN ++G    ID+    RST + T+ S   S   SEA      + ++TTE ESI +++
Sbjct: 689 LNSYFGTQQWIDL---ARSTGLQTQKSIPASKEISEALEEPTVECDTTTEEESIDKLN 743


>At5g39080.1 68418.m04728 transferase family protein similar to
           anthocyanin 5-aromatic acyltransferase from Gentiana
           triflora GI:4185599, malonyl CoA:anthocyanin
           5-O-glucoside-6'''-O-malonyltransferase from Perilla
           frutescens GI:17980232, Salvia splendens GI:17980234;
           contains Pfam profile PF02458 transferase family
          Length = 463

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
 Frame = +2

Query: 77  VSSKRISLVSSKH-KMRAFV-----VLACVAMAYG-RPEPPVGYSYS 196
           VSS   S  SSK  ++  FV     VL C+  A G  P  PVGY++S
Sbjct: 271 VSSSSSSTSSSKELRLSTFVIVYSYVLVCIIRARGGEPHRPVGYAFS 317


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,038,843
Number of Sequences: 28952
Number of extensions: 210175
Number of successful extensions: 717
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)