Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0229
         (740 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q16VD3 Cluster: Lingerer; n=5; Aedes aegypti|Rep: Linge...    33   7.4  
UniRef50_Q4A837 Cluster: Putative uncharacterized protein; n=5; ...    33   9.7  

>UniRef50_Q16VD3 Cluster: Lingerer; n=5; Aedes aegypti|Rep: Lingerer
           - Aedes aegypti (Yellowfever mosquito)
          Length = 1250

 Score = 33.1 bits (72), Expect = 7.4
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 364 SEQTSRSGTRTV-KFTPALPILFNVLFTTSRNTNTSYIYMMQPFNKTT 504
           +  TS  G  TV +  P LP+  NV   +S NTNT Y+    P ++T+
Sbjct: 782 NNSTSSVGVSTVNQSNPNLPVNNNVSNNSSSNTNTGYLSSQYPVSQTS 829


>UniRef50_Q4A837 Cluster: Putative uncharacterized protein; n=5;
           Mycoplasma hyopneumoniae|Rep: Putative uncharacterized
           protein - Mycoplasma hyopneumoniae (strain 7448)
          Length = 295

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 127 FRHLIRSHLYFILKVFHSYCCNFIKKTCIFYFV 29
           FRH I +  Y +L + +SY C+F +K   FY +
Sbjct: 95  FRHFIEAIFYSLLLLPYSYLCSFFQKIFNFYLI 127


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 719,817,752
Number of Sequences: 1657284
Number of extensions: 13976807
Number of successful extensions: 33303
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33246
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)