Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0229
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50269| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_31840| Best HMM Match : RuvA_N (HMM E-Value=5.6)                    29   4.0  
SB_16411| Best HMM Match : DUF791 (HMM E-Value=0)                      29   4.0  
SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)               28   6.9  
SB_24073| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_43089| Best HMM Match : Vicilin_N (HMM E-Value=0.17)                28   9.1  

>SB_50269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = -3

Query: 360 FVQIPSASGTKDVVT*FTAHHVDCNSLCSRN--CY-YSYI-KRKMCIL 229
           F ++P++     V+   T    DC  +C RN  CY  +YI KR  C+L
Sbjct: 374 FFEMPNSILQGHVIKTITTTEKDCRVICKRNSACYSINYIRKRSQCVL 421


>SB_31840| Best HMM Match : RuvA_N (HMM E-Value=5.6)
          Length = 895

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -3

Query: 429 EQYRKCRCELYRSSPGSRCLLASFVQIPSASGTKDVVT*FTAHHVDCNSLCSRNC 265
           E+  +CR  +   +     LL S+ Q+ SA   ++++  F   H D N   SR C
Sbjct: 391 EKSSQCRELVIHQARSWELLLPSYKQVYSALHPRNLLKIFIKPHADANCSLSRGC 445


>SB_16411| Best HMM Match : DUF791 (HMM E-Value=0)
          Length = 445

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
 Frame = -3

Query: 249 KRKMCILYFVIFSLCTGTS-----GLTIFGRLIVG 160
           ++K C+L+ +++S+C  T      G+ IFGR++ G
Sbjct: 101 RKKACVLFTILYSVCCLTKLSRNYGILIFGRVLGG 135


>SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)
          Length = 936

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 137 SEVLRCRFPTINRPKIVRPDVPVHNE 214
           S +L+ +FP + +PKI R  VP  +E
Sbjct: 521 SNILKTKFPPLEQPKISRHQVPCGDE 546


>SB_24073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 369 LASFVQIPSASGTKDVVT*FTAHHVDCNSLCSRNCY-YSYI 250
           L  F +I    G +DV+     HH  C+ LC RN + ++Y+
Sbjct: 752 LGEFTEILEKIGRRDVIHEIENHHRTCH-LCIRNSFDFTYV 791


>SB_43089| Best HMM Match : Vicilin_N (HMM E-Value=0.17)
          Length = 305

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 61  NCNNNYERLLK*N--TSGNGLNVGNRLKRSLEMSISHYQST 177
           N NNN  RL   N   + NGLN  NRL  S  ++ S+   T
Sbjct: 254 NSNNNSNRLNNSNRLNNSNGLNNSNRLNNSNRLNNSNRAKT 294


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,905,988
Number of Sequences: 59808
Number of extensions: 462615
Number of successful extensions: 906
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)