Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0229
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078785-4|AAC27089.3|  609|Caenorhabditis elegans Hypothetical ...    29   4.6  
AF078785-3|AAC27091.2|  481|Caenorhabditis elegans Hypothetical ...    29   4.6  
Z81055-7|CAB02897.2|  445|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical ...    28   8.0  

>AF078785-4|AAC27089.3|  609|Caenorhabditis elegans Hypothetical
           protein C04E12.4 protein.
          Length = 609

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 406 TPALPILF-NVLFTTSRNTNTSYIYMMQPFNKTTLLNIRNW 525
           +P  P L  NV     R  N +YI+M +P NK   + + NW
Sbjct: 479 SPVKPYLASNVEHVVDRRLNVAYIHMKEPINKR--IGLINW 517


>AF078785-3|AAC27091.2|  481|Caenorhabditis elegans Hypothetical
           protein C04E12.5 protein.
          Length = 481

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 406 TPALPILF-NVLFTTSRNTNTSYIYMMQPFNKTTLLNIRNW 525
           +P  P L  NV     R  N +YI+M +P NK   + + NW
Sbjct: 350 SPVKPYLASNVEHVVDRRLNVAYIHMKEPINKR--IGLINW 388


>Z81055-7|CAB02897.2|  445|Caenorhabditis elegans Hypothetical
           protein F01G10.9 protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 528 EPLKGPQLSVNISRTRGHGEAHSLSQLKMFDRYN 629
           +PL  P  S N+S+ R +  + S S     +RYN
Sbjct: 166 KPLSPPSSSANVSKQRSYTTSSSSSSNSAIERYN 199


>AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical
           protein Y62H9A.1 protein.
          Length = 366

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 5   RKNIYKTRHKIKYACFFYEIATITMKD 85
           R N+YKT ++IKY    Y IA + + D
Sbjct: 175 RDNLYKTDNRIKYFFNEYSIAIVRVSD 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,271,281
Number of Sequences: 27780
Number of extensions: 360109
Number of successful extensions: 924
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)