Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0229
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g12130.1 68415.m01306 hypothetical protein                          28   5.7  
At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containi...    28   7.5  
At2g25380.1 68415.m03039 zinc finger protein-related very low si...    27   9.9  

>At2g12130.1 68415.m01306 hypothetical protein
          Length = 209

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 279 CSRNCYYSYIKRKMCILY 226
           C RNC++ +  R++CI Y
Sbjct: 192 CCRNCFFYWYARELCIFY 209


>At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 656

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +2

Query: 179 KIVRPDVPVHNENITKYN 232
           K V PDVPVHN  IT Y+
Sbjct: 437 KTVIPDVPVHNALITMYS 454


>At2g25380.1 68415.m03039 zinc finger protein-related very low
           similarity to SP|O95376 Ariadne-2 protein homolog
           (ARI-2) (Triad1 protein) {Homo sapiens}; contains Pfam
           profile PF01485: IBR (In Between Ring fingers) domain
          Length = 350

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 115 IRSHLYFILKVFHSYCCNFIKKTCI 41
           +   ++F  K  H YC + +K+TC+
Sbjct: 208 VADRMFFTDKCLHRYCFSCVKQTCV 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,702,575
Number of Sequences: 28952
Number of extensions: 311575
Number of successful extensions: 667
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)