Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0228
         (697 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    23   2.4  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   7.3  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   7.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.6  

>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 120 FDVPLSNISLWSNYISHGYRNEV 52
           FDV L N+SL  NY +   R+ +
Sbjct: 112 FDVKLQNVSLIINYENQRTRSRI 134


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 64  SERGLQEVVTYKGKIFQQAIF 2
           + R  +++VTYKG  +++  F
Sbjct: 509 ASRAFKKIVTYKGGKYRKVTF 529


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 336 PLKSI*LLRSKNSNKNPSPLAKPVV 262
           PL  +    +K SNK+P PLA   V
Sbjct: 36  PLAMLAAQCNKLSNKSPPPLADAAV 60


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +3

Query: 258 KILPVWPKDLGSYYCFCCEAIISILRVGQPLNNTS 362
           ++LP WP  +G+ +     A ++      P  N+S
Sbjct: 272 QVLPQWPSPIGASHLPYFAAAVAAASNLSPKTNSS 306


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,371
Number of Sequences: 336
Number of extensions: 3438
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)