Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0228
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    31   0.16 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   5.9  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   7.8  
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||...    25   7.8  

>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 16/66 (24%), Positives = 33/66 (50%)
 Frame = +1

Query: 469 NSLAVYSSRLLISQFIKIIRYNKMSKSTLSLIKCKQPDFSLTLYQLSLRSVIVIAVFANI 648
           N+  VY++R  I  F  ++      +S++ L++  Q DF+L        +   I +F + 
Sbjct: 239 NAPLVYANRGRIEDFEWLVNSGIYVESSIVLVRANQSDFALATANAEKYNASAILIFEDT 298

Query: 649 DITNID 666
            +T++D
Sbjct: 299 YLTSLD 304


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
 Frame = +3

Query: 198  LPVFVYFCPFSDV---KATIRYTKI---LPVWPKDLGSYYCFCCEAIISILRVGQPLNNT 359
            +PV   +   S+V   K ++R+  I   L V   +    + FC E +  +  +G    + 
Sbjct: 1209 IPVITTYTHLSEVENKKYSLRFNSIDEALDVELLNRSKAFLFCLEMLKEVKELGSTFKSI 1268

Query: 360  SSTSCVIY 383
            SSTS  +Y
Sbjct: 1269 SSTSFKVY 1276


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 511  FIKIIRYNKMSKSTLSLIKCKQPDFSLTLYQLSLRSVIVIAVFANIDITNIDTS 672
            F+K++ Y    + T+  +  +  DF L L +LS       A +A ++I N+ TS
Sbjct: 988  FLKVVAYMVYYRRTVGEMSFRVSDFELALSRLSTND----ADYAILNILNLLTS 1037


>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -2

Query: 147 LNSFSEVDYFDVPLSNISLWSNYISHGYR-NEVSKKLL--LTKVRSS 16
           L    ++D  ++PL  IS    +++ GYR +E    LL  L K+R +
Sbjct: 11  LTKNGDIDAANIPLKRISYTDPFLAEGYRIHETIVNLLVFLKKIRGA 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,804
Number of Sequences: 5004
Number of extensions: 58875
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)