Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0228
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0099 - 41076056-41076059,41076135-41076175,41076937-410770...    33   0.22 
03_05_0615 + 26137785-26138593,26139307-26141368                       29   2.7  
11_04_0359 + 16735204-16735676,16736597-16736647,16736860-167369...    29   3.5  
01_06_0933 - 33161687-33162205,33162290-33162376,33162459-331626...    28   6.2  

>01_07_0099 -
           41076056-41076059,41076135-41076175,41076937-41077041,
           41077476-41077552,41078773-41078944,41079099-41079194,
           41080268-41080465
          Length = 230

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +1

Query: 442 KPQFGVLKTNSLAVYSSRLLI-SQFIKIIRYNKMSKSTLSLIKCKQPDFSLTLY 600
           KP+ G L + S  V  + LL  S +  I     +SK++++L+ C+  DFS+ +Y
Sbjct: 117 KPRKGPLTSESWKVKQTELLTRSTYYMIPTLLLVSKNSINLVSCRDQDFSVHIY 170


>03_05_0615 + 26137785-26138593,26139307-26141368
          Length = 956

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
 Frame = +3

Query: 219 CPFSDVKATIRYTKILPVWPKDLGSYYCFC-CEAIISILRVGQPLNNTSSTSCVIYVTEF 395
           CPF  ++  +     +   P+ +GS    C  E ++   R    L    +  C++Y+   
Sbjct: 743 CPFPHLQKLVLSNHNIQRIPRWIGSLVNLCHLEIVVKTTRQND-LGTLGNLPCLLYLKIC 801

Query: 396 RIQEPLNPRGSCAIKQTPIRCLEDELF 476
           R+ EP+  +    +     RCL++  F
Sbjct: 802 RLYEPVESQ-QLIVPNRGFRCLKELCF 827


>11_04_0359 +
           16735204-16735676,16736597-16736647,16736860-16736934,
           16737011-16737062,16737147-16737280,16737397-16737511,
           16737665-16737751,16737855-16737903,16738351-16738435,
           16738641-16738715,16738848-16739029,16739905-16739969
          Length = 480

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 454 GVLKTNSLAVYSSRLLISQFIKIIRYNKMSKSTLSLIKCKQ 576
           GVLK  +L+VY SR+++++     +Y+  S       KCKQ
Sbjct: 390 GVLKEEALSVYKSRMVVTKLFG-HKYDLCSLRISGASKCKQ 429


>01_06_0933 -
           33161687-33162205,33162290-33162376,33162459-33162695,
           33162778-33162886,33162997-33163313,33163398-33163607,
           33165380-33165901
          Length = 666

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 196 HYRYLYTFVRFQMSKPQFDTLKYYRFGQRTWVLITVFAAKQLYR 327
           H+RY +T  R + S       +YY  G RTW  + V  A + Y+
Sbjct: 581 HFRYTFTNDRVRRSA------RYYSHGWRTWAAVAVQLAWRRYK 618


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,848,381
Number of Sequences: 37544
Number of extensions: 325055
Number of successful extensions: 642
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)