Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0228
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26490.1 68416.m03304 phototropic-responsive NPH3 family prot...    31   0.96 
At3g59020.1 68416.m06578 importin beta-2 subunit family protein ...    27   9.0  
At2g43990.1 68415.m05470 expressed protein                             27   9.0  
At2g31660.1 68415.m03865 importin beta-2 subunit family protein ...    27   9.0  
At2g07749.1 68415.m00892 hypothetical protein contains Pfam prof...    27   9.0  
At1g58320.1 68414.m06634 hypothetical protein similar to PGPS/D1...    27   9.0  

>At3g26490.1 68416.m03304 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 588

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +3

Query: 198 LPVFVYFCPFS---DVKATIRYTKILPVWPKDLGSYYCFCCEAI 320
           L +F+  C F    D   T++ TK+LP+W +DLG     C EAI
Sbjct: 130 LELFLTTCVFKSWRDSYVTLQTTKVLPLWSEDLG-ITNRCIEAI 172


>At3g59020.1 68416.m06578 importin beta-2 subunit family protein
           similar to D-Importin 7/RanBP7 [Drosophila melanogaster]
           GI:7542336; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 1112

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/56 (23%), Positives = 31/56 (55%)
 Frame = +1

Query: 529 YNKMSKSTLSLIKCKQPDFSLTLYQLSLRSVIVIAVFANIDITNIDTSYRFSTVVM 696
           +N +S+ T   + CK+PD+   L+ +    + V+    NID ++++ + +   +V+
Sbjct: 785 HNYISRGTGHYLTCKEPDYQQNLWNV----ISVLMANKNIDDSDLEPAPKLLGIVL 836


>At2g43990.1 68415.m05470 expressed protein
          Length = 632

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -1

Query: 289 PKSFGQTGSILVYRIVALTSENGQKYTNTGSVQDQ 185
           P S  +TGS L+YR  +  +++G+  +N+ S QD+
Sbjct: 198 PVSKLETGSDLIYRRKSEATDDGRLSSNSSSYQDR 232


>At2g31660.1 68415.m03865 importin beta-2 subunit family protein
           similar to D-Importin 7/RanBP7 [Drosophila melanogaster]
           GI:7542336; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 1040

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +1

Query: 532 NKMSKSTLSLIKCKQPDFSLTLYQLSLRSVIVIAVFANIDITNIDTSYRFSTVV 693
           N +S+ T   + CK+PD+  +LY +    +  +    NI+ + I+++ +   VV
Sbjct: 708 NFISRGTAHFLTCKEPDYQQSLYNV----LSTLMTDRNIEDSEIESAPKLIEVV 757


>At2g07749.1 68415.m00892 hypothetical protein contains Pfam profile
           PF05919: Mitovirus RNA-dependent RNA polymerase
          Length = 246

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 475 KSSSSRHRIGVCFIAQDPLGLSGSWIL 395
           KS + RH   V F+A  PLG  GSW L
Sbjct: 71  KSVTGRHD-EVVFVAGQPLGYYGSWAL 96


>At1g58320.1 68414.m06634 hypothetical protein similar to PGPS/D12
           [Petunia x hybrida] GI:4105794; contains Pfam profile
           PF04749: Protein of unknown function, DUF614
          Length = 148

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 228 SDVKATIRYTKILPVWPKDLGSYYCFCCEAIIS 326
           S  +A +R+   LP  P   G+ +CFCC   ++
Sbjct: 78  SKYRAKLRHQYALPEAPCADGAIHCFCCPCALT 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,419,560
Number of Sequences: 28952
Number of extensions: 289187
Number of successful extensions: 591
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)