Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0227
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 31 0.22
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 28 1.6
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 27 2.8
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb... 27 2.8
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 26 4.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 4.8
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 26 6.4
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 26 6.4
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 26 6.4
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 8.4
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 8.4
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 8.4
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 30.7 bits (66), Expect = 0.22
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = -1
Query: 257 KLSEPP-KRDKAFSNSKQSLRANTPSRS--VNRTVREAVESQVTIAT-PRSKKIEEMIPI 90
K EP K++ K+ + S+ ++R +R + S + P+S KI+ +IP
Sbjct: 151 KPGEPEVKQETNLQKEKKESKVKLESKEEKISRNLRSSSRSISPVTEQPQSPKIQPVIPE 210
Query: 89 YENLHPGRESNIIYDKNKLKPKTVNNTRS 3
+ +ES++ K + P + N RS
Sbjct: 211 KKEKSEKKESSMTLRKRSVSPSSQNTARS 239
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = -2
Query: 484 SDDVPEYQNFHATNNYIPVPKPRLRTRYEDKPNEI--HEVKVLKPIIEHERSETNDYVKS 311
S+ PE T + + RL E+ I H+ K I E +ET D +KS
Sbjct: 158 SEGEPESSTSATTTSVARRTRQRLAEHLENSKKTILQHDNKEEDKEIHSEENETKDEIKS 217
Query: 310 ITRRSKSRRQEHTASANR 257
+ + ++QE +S +
Sbjct: 218 EKKEPEIKKQEGGSSTEK 235
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 337 SETNDYVKSITRRSKSRRQEHTASANRSYLNHRNE 233
S T+ S+ RR++ R EH ++ ++ L H N+
Sbjct: 164 SSTSATTTSVARRTRQRLAEHLENSKKTILQHDNK 198
>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 624
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 179 SVNRTVREAVESQVTIATPRSKKIEEMIPIYENLHPGRESNIIY 48
+ N TV+ E TI + +E IPI+ LHP R ++I+
Sbjct: 371 TTNTTVKNPFERFDTIDLVDGGEDDENIPIWPLLHPQRFVDVIF 414
>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 376
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = -1
Query: 194 NTPSRSVNRTVREAVESQVTIATPRSKKIEEMIPIYENL 78
NT S ++ ++ + + ++ IATP K +Y+N+
Sbjct: 98 NTASEAIAQSYPKFLSKKINIATPNKKAFSASNDVYQNI 136
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 93 RNHFFYFLRTRGSNCHLAFHSFSNCAIDRSRW 188
RNHF L T G H H+F N + RW
Sbjct: 269 RNHFITALVTLGEGNHNYHHAFPNDYRNGLRW 300
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -2
Query: 346 HERSETNDYVKSITR--RSKSRRQEHTASANRSYLN 245
H R+ + Y SITR +S S EH + SYL+
Sbjct: 89 HSRNSSLGYAPSITRSIKSISNNTEHLGADTESYLS 124
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 175 TDRDGVFALNDCLEFEKALSRFGGSD 252
T+ V+AL+ ++F LSRF GSD
Sbjct: 142 TNVSKVYALHPSMQFCTILSRFNGSD 167
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 400 EDKPNEIHEVKVLKPIIEHERSETNDYVKSITRRSKS 290
E +PNEI E +K ++ E TN+ V+ S++
Sbjct: 476 EAEPNEIIEENAVKSLLNQEGPATNEEVEKNNANSEN 512
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = -2
Query: 439 YIPVPKPRLRTRYEDKPNEIHEVKVLKPIIEHERSETNDYVKSITRRSKSR 287
Y P+P+ + + +++ L IE++ S++NDY+ R +SR
Sbjct: 492 YEPIPQLYTHFSHSSECLSVNQDTELLGKIENDNSKSNDYLSVRNTRPRSR 542
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 493 EAESDDVPEYQNFHATNNYIPVPKP 419
EA S +P Y NF +N +PV +P
Sbjct: 381 EALSIIIPYYSNFRFSNELLPVLEP 405
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 385 EIHEVKVLKPIIEHERSETNDYVKSITRR-SKSRRQEHTASANRSYLNHRNETK 227
++ EVK KPI+ ++ TN ++ + S+ + T NR N ++ TK
Sbjct: 294 KLAEVKFGKPILIVKKKSTNSVIRQLAENLSELAEKSFTIEQNRE--NEKSSTK 345
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 8.4
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = -1
Query: 239 KRDKAFSNSKQSLRANTPSRSVNRT-----VREAVESQVTIATPRSKKIEEMIPIYENLH 75
KR + S + +T SRS++R+ +RE T + S E+ IY++
Sbjct: 1026 KRRIILDVKESSSKPDTSSRSLSRSKTLPALREYQLKSTTASVDCSIGTREVDEIYDSQM 1085
Query: 74 PGRESNIIYDKNKL 33
P + ++I+ +NK+
Sbjct: 1086 PPVKPSLIHSRNKI 1099
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,865,783
Number of Sequences: 5004
Number of extensions: 58358
Number of successful extensions: 196
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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