Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0227
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1418 - 30043911-30044046,30044412-30044701 29 2.9
05_01_0093 - 617515-619260 29 2.9
07_01_0185 - 1313472-1313480,1313674-1313710,1314150-1314379,131... 29 3.8
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 29 5.0
01_01_0442 - 3310006-3310013,3311762-3312206 29 5.0
08_02_0550 + 18509365-18509589,18509668-18510644,18510828-185118... 28 6.6
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 28 6.6
06_02_0303 + 14022428-14022652,14023247-14024159,14024310-140247... 28 6.6
03_06_0432 + 33879916-33880348,33881620-33881936,33882195-338822... 28 6.6
01_01_0443 - 3314002-3314565 28 6.6
03_05_0877 + 28443481-28443538,28443641-28443911,28444028-284442... 28 8.8
02_01_0461 - 3328662-3329087,3329124-3329201,3329370-3329597,333... 28 8.8
>06_03_1418 - 30043911-30044046,30044412-30044701
Length = 141
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 257 KLSEPPKRDKAFSNSKQSLRANTPSRSVNRTVREAVESQV 138
K+ E K + S+QSLR TP +RTV++ +V
Sbjct: 8 KVREDALETKTVTQSRQSLRKMTPKSQCSRTVKDETSHRV 47
>05_01_0093 - 617515-619260
Length = 581
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = -2
Query: 409 TRYEDKPNEIHEVKVLKPIIEHERSETNDYVKSITRRSKSRRQEHTASANRSYLNHR 239
T +ED P E V+ + + H R T S++RR SR +++ +A L HR
Sbjct: 37 TSHEDAPAEDRHVREVVTLTAHSRPYTAACAASLSRR-LSRTRDYVVAAKCLALAHR 92
>07_01_0185 -
1313472-1313480,1313674-1313710,1314150-1314379,
1314774-1314899,1315009-1315050,1315227-1315367
Length = 194
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = -2
Query: 418 RLRTRYEDKPNEIHEVKVLKPIIEHERSETNDY----VKSITRRSKSRRQEHTASANRSY 251
R+R + ED+ + ++ ++ + + ERS+ DY + + SRR+E A Y
Sbjct: 91 RMREKSEDQRERVERIRHMQDMFKKERSKCRDYRTRDGHNPSYYQNSRREEWYWDAESFY 150
Query: 250 LNHR 239
N R
Sbjct: 151 ANQR 154
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 445 NNYIPVPKPRLRTRYEDKPNEIHEVKVLKP 356
N YIP P+ + Y+D P EI + + KP
Sbjct: 239 NEYIPDPEDKKPEGYDDIPKEITDPEATKP 268
>01_01_0442 - 3310006-3310013,3311762-3312206
Length = 150
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 466 YQNFHATNNYIPVPKPRLRTRYEDKPNEIHEVK 368
Y+N H+ N +P+PK + D N + E K
Sbjct: 54 YRNTHSLNGAMPLPKAEVSVTCHDTKNRVMECK 86
>08_02_0550 +
18509365-18509589,18509668-18510644,18510828-18511802,
18511885-18512142,18512216-18512326,18512418-18512496,
18512595-18512687,18512773-18512958
Length = 967
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/73 (26%), Positives = 30/73 (41%)
Frame = -1
Query: 248 EPPKRDKAFSNSKQSLRANTPSRSVNRTVREAVESQVTIATPRSKKIEEMIPIYENLHPG 69
E P DKA ++ + V EAVE + P+ K + + P + G
Sbjct: 553 EQPMLDKAELEREEEVVQEREKEVVQEREEEAVEEHKEKSAPKKKFVVKAFPGRKRDIKG 612
Query: 68 RESNIIYDKNKLK 30
+ + +YDK K K
Sbjct: 613 KAKD-VYDKRKAK 624
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 28.3 bits (60), Expect = 6.6
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 19/147 (12%)
Frame = -2
Query: 535 C*TNSASLKSVCNSEAESDDVPEYQNFH-ATNNYIPVPKPRLRTRY---------EDKPN 386
C T SLK + N++A++ + +T + P P P+ + + +D+P
Sbjct: 76 CRTKKVSLKLLDNADADTSKRERTRRMRTSTTSDSPSPSPQNKASFNTSRGAAFRDDEPG 135
Query: 385 -EIHEVKVLKPIIEHERSETNDYVKSITRRSKS--------RRQEHTASANRSYLNHRNE 233
+ +EV+ KP+I H + + + + T SKS +QE SA + H +
Sbjct: 136 AKDNEVEKRKPLILHLKKRSTKELSTDTTSSKSGLLGKSSEEKQEKHGSALK-VKKHLHP 194
Query: 232 TKLFQIPNSH*EQIRHRDLSIAQLEKL 152
+L + +Q HRD ++ +K+
Sbjct: 195 MELSPKKYKNKKQHNHRDSKRSEAKKV 221
>06_02_0303 +
14022428-14022652,14023247-14024159,14024310-14024700,
14024949-14025206,14025284-14025394,14025486-14025564,
14025842-14026027
Length = 720
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/73 (26%), Positives = 30/73 (41%)
Frame = -1
Query: 248 EPPKRDKAFSNSKQSLRANTPSRSVNRTVREAVESQVTIATPRSKKIEEMIPIYENLHPG 69
E P DKA ++ + V EAVE + P+ K + + P + G
Sbjct: 392 EQPMLDKAELEREEEVVQEREKEVVQEREEEAVEEHKEKSAPKKKFVVKAFPGRKRDIKG 451
Query: 68 RESNIIYDKNKLK 30
+ + +YDK K K
Sbjct: 452 KAKD-VYDKRKAK 463
>03_06_0432 +
33879916-33880348,33881620-33881936,33882195-33882281,
33882690-33883253
Length = 466
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -2
Query: 346 HERSETNDYVKSIT--RRSKSRRQEHTASANRSYLNHRNETKLFQIPNSH*EQIRHRDLS 173
H++ D VK T ++ SR ++HT + L HRN T F + + +R LS
Sbjct: 127 HDKGHLQDAVKRWTFVQKLASRVEQHTCLLENTRLVHRNMTAAFVAQMVYSKVLRKTSLS 186
>01_01_0443 - 3314002-3314565
Length = 187
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 466 YQNFHATNNYIPVPKPRLRTRYEDKPNEIHEVK 368
Y+N H+ N +P+PK + D N + E K
Sbjct: 63 YRNTHSLNGAMPLPKAEVSVTCHDVKNHVMECK 95
>03_05_0877 +
28443481-28443538,28443641-28443911,28444028-28444242,
28444329-28445057,28445143-28445297,28445384-28445965
Length = 669
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -2
Query: 445 NNYIPVPKPRLRTRYEDKPNEIHEVKVLKPIIEHERSETND 323
N IPV K ++ T YED H+ V + E ERS T D
Sbjct: 452 NTRIPVKKSQVFTTYED-----HQTTVSIKVFEGERSLTKD 487
>02_01_0461 -
3328662-3329087,3329124-3329201,3329370-3329597,
3330181-3330204
Length = 251
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 257 KLSEPPKRDKAFSNSKQSLRANTPSRSVNRTVREAVESQV 138
K+ E + K + S+QSLR P +RTV++ ++
Sbjct: 123 KVREDARETKTVTQSRQSLRKMMPKSRCSRTVKDETSCRI 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,971,426
Number of Sequences: 37544
Number of extensions: 316425
Number of successful extensions: 873
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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