Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0227
(731 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50799| Best HMM Match : I-set (HMM E-Value=0) 31 1.3
SB_44813| Best HMM Match : Crystallin (HMM E-Value=0.26) 30 2.2
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 29 3.9
SB_41280| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_18770| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_8064| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_22332| Best HMM Match : bZIP_2 (HMM E-Value=0.99) 28 6.8
SB_53685| Best HMM Match : bZIP_2 (HMM E-Value=0.99) 28 6.8
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41) 28 6.8
SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28) 28 9.0
>SB_50799| Best HMM Match : I-set (HMM E-Value=0)
Length = 1195
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/94 (23%), Positives = 37/94 (39%)
Frame = -2
Query: 541 SIC*TNSASLKSVCNSEAESDDVPEYQNFHATNNYIPVPKPRLRTRYEDKPNEIHEVKVL 362
S+ T K C E S D +NF T +PKP ++ +Y P + +
Sbjct: 343 SVSSTIEVIFKPECAVEPISGDTVVGKNFTFTCRVEGIPKPDIKWKYNGGPLNLAHSTIN 402
Query: 361 KPIIEHERSETNDYVKSITRRSKSRRQEHTASAN 260
++ T+ Y S + SR ++SA+
Sbjct: 403 NTLVVFNVQNTDRYEGSYECEASSRAGNASSSAS 436
>SB_44813| Best HMM Match : Crystallin (HMM E-Value=0.26)
Length = 688
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/116 (21%), Positives = 44/116 (37%)
Frame = -2
Query: 502 CNSEAESDDVPEYQNFHATNNYIPVPKPRLRTRYEDKPNEIHEVKVLKPIIEHERSETND 323
C++ + ++H NY PRL R + PN I + + SE D
Sbjct: 562 CSAHGNKSPADQCMSYHEKMNY----SPRLLQRRKTAPNVIRPNSTMALETGRKASEEKD 617
Query: 322 YVKSITRRSKSRRQEHTASANRSYLNHRNETKLFQIPNSH*EQIRHRDLSIAQLEK 155
V + Q+ A + NH +T+ H E R +S+++++K
Sbjct: 618 LVLKQAMLRRIEIQDKVTKAKKLSQNHFGDTR-------HRECSRKLSISLSKIDK 666
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = -2
Query: 433 PVPKPRLRTRYEDKPNEIHEVKVLKPIIEHERSETNDYVKSITRRSKSRRQEHTASANRS 254
PVP+ R R +D + V P R E N S RRSK +R++++ASA RS
Sbjct: 240 PVPERRQERRRQDSSSP----SVSPPRRSKGRREENSV--SPPRRSKGKREDNSASAPRS 293
>SB_41280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -1
Query: 248 EPPKRDKAFSNSKQSLRANTPSRSVNRTVREAVESQVTIATPRSKKIE 105
+PP + + F ANTP + +RTV + ++ T P++ + E
Sbjct: 167 DPPPQLQGFQKPSAGDGANTPGSTASRTVHDHTRARCTRRCPQAGRTE 214
>SB_18770| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 325 DYVKSITRRSKSRRQEHTASANRSYLNHRNETKLFQI 215
D + IT + + RQ H SA SY N N+T + +I
Sbjct: 117 DVINGITLQVWNSRQNHRHSAKHSYNNKNNKTGIQRI 153
>SB_8064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 631 IPLKSLSRNCLAFARDHWKENVPTRIWS 714
+P S+S C+AF W ++ T+IW+
Sbjct: 62 LPSSSISSLCVAFPASIWTDSKETKIWA 89
>SB_22332| Best HMM Match : bZIP_2 (HMM E-Value=0.99)
Length = 272
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -1
Query: 677 SRAKARQLRESDFNGISE*IREERKILNQRYLK 579
SR KAR+ E + I E RE R++ NQ+ LK
Sbjct: 134 SRQKARERNEERLSEIDELERENRELENQKPLK 166
>SB_53685| Best HMM Match : bZIP_2 (HMM E-Value=0.99)
Length = 716
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -1
Query: 677 SRAKARQLRESDFNGISE*IREERKILNQRYLK 579
SR KAR+ E + I E RE R++ NQ+ LK
Sbjct: 578 SRQKARERNEERLSEIDELERENRELENQKPLK 610
>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
Length = 1093
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -1
Query: 254 LSEPPKRDKAFSNSKQSLRANTPSRSVNRTVREAVESQVTIATPRSK 114
LS K +K + KQ+ RANTPSR V + + Q + +P SK
Sbjct: 630 LSSSGKCEKTKDHKKQNGRANTPSR-VPKESKMPSNDQTSEQSPSSK 675
>SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28)
Length = 1282
Score = 27.9 bits (59), Expect = 9.0
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -2
Query: 364 LKPI---IEHERSETNDYVKSITRRSKSRRQEHTASANRSYLNHRNETKLFQIPN 209
LKPI I S ND K I RR K RQ N Y +HR K+F +P+
Sbjct: 1190 LKPILLKISINASRFND--KDIPRRIKQERQ------NNRYTDHRKFRKVFSLPS 1236
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,388,114
Number of Sequences: 59808
Number of extensions: 388370
Number of successful extensions: 1248
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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