Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0227
         (731 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14480.1 68417.m02233 protein kinase family protein contains ...    29   3.2  
At4g10120.1 68417.m01655 sucrose-phosphate synthase, putative si...    28   5.6  
At3g10590.1 68416.m01273 myb family transcription factor contain...    28   5.6  
At1g33770.1 68414.m04174 protein kinase family protein contains ...    28   7.3  
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f...    27   9.7  

>At4g14480.1 68417.m02233 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 487

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = -2

Query: 397 DKPNEIHEVKVLKPIIEHERSETNDYVKSIT--RRSKSRRQE 278
           DK   + ++KVLK  +EH+R+  +  +++++  +  KSR +E
Sbjct: 417 DKDLVLEKLKVLKKSLEHQRARVSIIIEALSGDKEEKSREEE 458


>At4g10120.1 68417.m01655 sucrose-phosphate synthase, putative similar
            to sucrose-phosphate synthase, Zea mays, PIR2:JQ1329;
            contains non-consensus (GC) donor splice site at intron 4
          Length = 1050

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 523  SASLKSVCNSEAESDDVPEYQNFHATNNYIPVPKPRLRTRYED 395
            S  L+ +C   A  DD+ EY +  +T  Y    K  ++TR  D
Sbjct: 879  SVILRLICTEPAAEDDITEYASSCSTRCYAISVKQGVKTRRVD 921


>At3g10590.1 68416.m01273 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 206

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/70 (22%), Positives = 34/70 (48%)
 Frame = -2

Query: 481 DDVPEYQNFHATNNYIPVPKPRLRTRYEDKPNEIHEVKVLKPIIEHERSETNDYVKSITR 302
           ++V  Y      + Y+P P   + T++  KP E+ E+K +   + ++ ++  +YV     
Sbjct: 41  EEVKYYYEKLVNDVYLPKPLENV-TQHLQKPMEMEEMKYMYEKMANDVNQMPEYVPLAES 99

Query: 301 RSKSRRQEHT 272
               RR++ T
Sbjct: 100 SQSKRRKKDT 109


>At1g33770.1 68414.m04174 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 614

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
 Frame = -1

Query: 248 EPPKRDKAFS---NSKQSLRANTPSRSVNRTVREAVESQVTIATPRSKKIEEMIPIYENL 78
           E  KR KA +      +S+R       V      +  S V++ TP  KK +        +
Sbjct: 453 EEAKRKKAEAVKWRGHESVRRGLRDSKVTPEFIASGNSNVSLTTPSFKKEKRFTDTNSVI 512

Query: 77  HPGRESNIIYDKNKLKPKTVNN 12
           HP   SN+     ++KP   NN
Sbjct: 513 HPSSRSNV----GEVKPSRSNN 530


>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
           family protein / zinc finger (MYND type) family protein
           similar to ubiquitin-specific protease 15 (UBP15)
           [Arabidopsis thaliana] GI:11993475; contains Pfam
           profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
           PF01753: MYND finger
          Length = 672

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 529 TNSASLKSVCNSEAESDDVPEYQNFHATNNYIPV 428
           TN  S+ S+CN      + PEY+   + +  +PV
Sbjct: 518 TNDTSVSSLCNGIISHSEDPEYEKESSLSASVPV 551


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,398,944
Number of Sequences: 28952
Number of extensions: 280073
Number of successful extensions: 907
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)