Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0226
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1653 + 28415131-28415326,28415396-28415490,28415604-28415828     31   0.95 
12_01_0233 + 1750772-1752058                                           29   3.8  
11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,181...    29   3.8  
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486...    29   3.8  
11_01_0525 + 4132525-4132845,4133024-4133302                           29   5.1  
08_02_0501 + 17836948-17837373,17837857-17839184,17839270-178393...    28   6.7  
05_03_0254 + 11089236-11089290,11089366-11089415,11089530-110895...    28   8.8  

>07_03_1653 + 28415131-28415326,28415396-28415490,28415604-28415828
          Length = 171

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +3

Query: 393 GRGCGGVAIYLRADLKHA---VVDQSPSEYTQSAEHLFIEVTSSTPRYFL 533
           G G G V  Y+ ADL+     VV+++      +A H  IEV    PRY L
Sbjct: 64  GPGSGEVVRYVEADLRKTAEDVVEKARRLCIANAMHALIEVIEGEPRYVL 113


>12_01_0233 + 1750772-1752058
          Length = 428

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 122 PLIEALLVRLIMTIPLIYAINLLIPFRLLLNVSTSFISMLKVFTP 256
           P+  +L    ++ I  +YA++L       + +S SFI MLK   P
Sbjct: 155 PMTPSLYAASVVPIGALYALSLWFSNSAYIYLSVSFIQMLKALMP 199


>11_01_0236 +
           1811822-1812971,1814930-1814979,1815676-1816116,
           1816199-1816309,1816934-1817074,1817153-1817323,
           1817421-1817625,1817714-1817886,1817997-1818079,
           1818487-1818626,1818806-1818891,1818957-1819142,
           1819172-1819365,1820387-1820736,1821153-1821235
          Length = 1187

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 122 PLIEALLVRLIMTIPLIYAINLLIPFRLLLNVSTSFISMLKVFTP 256
           P+  +L    ++ I  +YA++L       + +S SFI MLK   P
Sbjct: 115 PMTPSLYAASVVPIGALYALSLWFSNSAYIYLSVSFIQMLKALMP 159


>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
            29048829-29049210,29049370-29049513,29049593-29049777,
            29049925-29050051,29050603-29050676,29051071-29051147,
            29051256-29051292,29051453-29051619,29051800-29051983,
            29052053-29052130,29052451-29052570,29052648-29052707,
            29053057-29053179,29053848-29053941,29054019-29054197,
            29054737-29055039,29055373-29055474,29055553-29055693,
            29055831-29055995,29056168-29056344,29056432-29056554,
            29057787-29057867,29057983-29058099,29058214-29058386,
            29058846-29058923,29058994-29059141,29059755-29059877,
            29060015-29060071,29060145-29060255,29060382-29060573,
            29060690-29060863,29061263-29061373,29061462-29061531,
            29061734-29061812,29061898-29062000,29062086-29062256,
            29062348-29062470,29062548-29062661,29062935-29063041,
            29063117-29063168,29063245-29063351,29063589-29063703,
            29063819-29063929,29064016-29064153,29064230-29064352,
            29064535-29064606,29064774-29064886,29066780-29067110,
            29067199-29067381,29068669-29068863,29068943-29069110,
            29069208-29069340,29069511-29069595,29069726-29069765
          Length = 2591

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 477  QSAEHLFIEVTSSTPRYFLEFFIVLQDTLIIS 572
            Q+A H++  + ++TPR   E   VL DTLI S
Sbjct: 1822 QAALHVWKTIVANTPRTLKEIMPVLMDTLISS 1853


>11_01_0525 + 4132525-4132845,4133024-4133302
          Length = 199

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 264 QENGVNTLSIDMNDVETFRRR 202
           QENG+N L++D  D+  FR R
Sbjct: 169 QENGINGLAVDDEDMNAFRDR 189


>08_02_0501 + 17836948-17837373,17837857-17839184,17839270-17839380,
            17839719-17839998,17840275-17840396,17840451-17840556,
            17840814-17841020,17841130-17841255,17841719-17841817,
            17842265-17842456,17842555-17843073
          Length = 1171

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 462  PSEYTQSAEHLFIEVTSSTPRYFLEFFIVLQDTLIISHLLEV 587
            P   + SA H+F E  +S+P Y+L   +++   LI   L ++
Sbjct: 1106 PPTISTSAYHVFWEACASSPLYWLSTLVIVVTALIPYFLYKI 1147


>05_03_0254 +
           11089236-11089290,11089366-11089415,11089530-11089562,
           11090601-11091674,11092245-11092728,11092857-11092882,
           11092883-11092993,11093082-11093171,11093251-11093322,
           11094043-11094153,11095086-11095143,11095605-11095804,
           11096666-11096818,11097134-11097334
          Length = 905

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 455 INDCMLQISTEVDCNTTTSATRPVISQKFVSGECILRG 342
           +N  M Q+ + V C+  + + R  I  +  +G+C LRG
Sbjct: 668 VNVLMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRG 705


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,941,063
Number of Sequences: 37544
Number of extensions: 386133
Number of successful extensions: 935
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)