Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0226
(736 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 44 2e-04
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 36 0.043
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 36 0.043
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 32 0.70
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 31 1.2
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 31 1.2
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 31 1.2
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 30 2.8
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 29 6.6
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 29 8.7
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 29 8.7
AE013599-2118|AAO41387.1| 394|Drosophila melanogaster CG12970-P... 29 8.7
AE013599-2117|AAF58101.2| 414|Drosophila melanogaster CG12970-P... 29 8.7
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 44.0 bits (99), Expect = 2e-04
Identities = 26/85 (30%), Positives = 47/85 (55%)
Frame = +3
Query: 264 DLLSSFDSDHVHAVLISETFLKPSLPSSQYALPGYKLLRNDRTGRGCGGVAIYLRADLKH 443
+L+ +++H+H LI+ET+L S ++ +P Y + RNDR GGVAI + L H
Sbjct: 28 ELIKFLENNHIHIALINETWLTHS---DRFNIPEYTIYRNDRKESRGGGVAIAVSNTLIH 84
Query: 444 AVVDQSPSEYTQSAEHLFIEVTSST 518
+Q P + E++ I++ + +
Sbjct: 85 ---EQIPCIKSHVIENVGIQINTDS 106
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 36.3 bits (80), Expect = 0.043
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +3
Query: 249 SRHFPDLLSSFDSDHVHAVLISETFLKPSLPSSQYALPGYKLL-RNDRTGRGCGGVAIYL 425
SRH +L ++ +L+SET L + + +PGY N G+ GG I +
Sbjct: 15 SRHTQELTQFIYEKNIDVMLLSETHLTNK---NNFHIPGYLFYGTNHPDGKAHGGTGILI 71
Query: 426 RADLKHAVVDQSPSEYTQS 482
R +KH ++ Y QS
Sbjct: 72 RNRIKHHHLNNFDKNYLQS 90
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 36.3 bits (80), Expect = 0.043
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +3
Query: 249 SRHFPDLLSSFDSDHVHAVLISETFLKPSLPSSQYALPGYKLL-RNDRTGRGCGGVAIYL 425
SRH +L ++ +L+SET L + + +PGY N G+ GG I +
Sbjct: 15 SRHTQELTQFIYEKNIDVMLLSETHLTNK---NNFHIPGYLFYGTNHPDGKAHGGTGILI 71
Query: 426 RADLKHAVVDQSPSEYTQS 482
R +KH ++ Y QS
Sbjct: 72 RNRIKHHHLNNFDKNYLQS 90
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 32.3 bits (70), Expect = 0.70
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +3
Query: 297 HAVLISETFLKPSLPSSQYALPGY--KLLRNDRTGRGCGGVAIYLRADLKHAVVDQSPSE 470
H ++++ET L + S++ LPGY L +N + + GGVA + + L+H ++ E
Sbjct: 49 HIIIVTETRLDNN--STKLELPGYFTYLAQNPASSKR-GGVATIVNSSLRHMALEPIEKE 105
Query: 471 YTQSA 485
QSA
Sbjct: 106 CIQSA 110
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 31.5 bits (68), Expect = 1.2
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 297 HAVLISETFLKPSLPSSQYALPGY-KLLRNDRTGRGCGGVAIYLRADLKHAVVDQSPSEY 473
H V+++ET L S++ LPGY L + GGVA + + ++H ++ E
Sbjct: 37 HIVIVTETRLDNK--STKLELPGYFTYLAQNPVSSKRGGVATIVNSSIRHMALEPIEKEC 94
Query: 474 TQSA 485
QSA
Sbjct: 95 IQSA 98
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 31.5 bits (68), Expect = 1.2
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 297 HAVLISETFLKPSLPSSQYALPGY-KLLRNDRTGRGCGGVAIYLRADLKHAVVDQSPSEY 473
H V+++ET L S++ LPGY L + GGVA + + ++H ++ E
Sbjct: 37 HIVIVTETRLDNK--STKLELPGYFTYLAQNPVSSKRGGVATIVNSSIRHMALEPIEKEC 94
Query: 474 TQSA 485
QSA
Sbjct: 95 IQSA 98
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 31.5 bits (68), Expect = 1.2
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 297 HAVLISETFLKPSLPSSQYALPGY-KLLRNDRTGRGCGGVAIYLRADLKHAVVDQSPSEY 473
H V+++ET L S++ LPGY L + GGVA + + ++H ++ E
Sbjct: 37 HIVIVTETRLDNK--STKLELPGYFTYLAQNPVSSKRGGVATIVNSSIRHMALEPIEKEC 94
Query: 474 TQSA 485
QSA
Sbjct: 95 IQSA 98
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 30.3 bits (65), Expect = 2.8
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 297 HAVLISETFLKPSLPSSQYALPGY-KLLRNDRTGRGCGGVAIYLRADLKHAVVDQSPSEY 473
H ++++ET L + S++ LPGY L + GGVA + + ++H + E
Sbjct: 37 HIIIVTETRLDNN--STKLELPGYFTYLAQNPVSSKRGGVATIVNSSIRHMALKPIEKEC 94
Query: 474 TQSA 485
QSA
Sbjct: 95 IQSA 98
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 29.1 bits (62), Expect = 6.6
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +3
Query: 249 SRHFPDLLSSFDSDHVHAVLISETFLKPSLPSSQYALPGYKLLRNDRTGRGCGGVAIYLR 428
SR D+ + V +L++E LK Y Y R GGVA+++R
Sbjct: 15 SRKAKDVELFAHNKKVDILLVTELRLKRGETVKIYGYAYYPAYRPSLNNNSVGGVAVFVR 74
Query: 429 ADLKH 443
L+H
Sbjct: 75 TTLRH 79
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 28.7 bits (61), Expect = 8.7
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 303 VLISETFLKPSLPSSQYALPGY-KLLRNDRTGRGCGGVAIYLRADLKHAVVDQSPSEYTQ 479
V+++ET L S++ LPGY L + GGVA + + ++H ++ E Q
Sbjct: 1 VIVTETRLDNK--STKLELPGYFTYLAQNPVSSKRGGVATIVNSSIRHMALEPIEKECIQ 58
Query: 480 SA 485
SA
Sbjct: 59 SA 60
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 28.7 bits (61), Expect = 8.7
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +3
Query: 348 QYALPGYKLLRNDRTGRGCGGVAIYLRADLKHAVVDQSPSEYTQSAEHLFIEVTSST 518
++ +P Y + RNDR GGVAI + L H +Q P + E++ I++ + +
Sbjct: 1 RFNIPEYTIYRNDRKESRGGGVAIAVSNTLIH---EQIPCIKSHVIENVGIQINTDS 54
>AE013599-2118|AAO41387.1| 394|Drosophila melanogaster CG12970-PB,
isoform B protein.
Length = 394
Score = 28.7 bits (61), Expect = 8.7
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 336 LPSSQYALPGYKLLRNDRTGRGCGGVAIY-LRADLKHAVVDQSPSEYTQSAEHLFIEV 506
L Q+ P +L++ +R + + Y ++ V+ Q PS ++ S + +FIEV
Sbjct: 244 LYGKQFLKPAIRLMKQNRNVKNKANLKSYHIKTLFLWQVIQQDPSYWSNSPKDIFIEV 301
>AE013599-2117|AAF58101.2| 414|Drosophila melanogaster CG12970-PA,
isoform A protein.
Length = 414
Score = 28.7 bits (61), Expect = 8.7
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 336 LPSSQYALPGYKLLRNDRTGRGCGGVAIY-LRADLKHAVVDQSPSEYTQSAEHLFIEV 506
L Q+ P +L++ +R + + Y ++ V+ Q PS ++ S + +FIEV
Sbjct: 264 LYGKQFLKPAIRLMKQNRNVKNKANLKSYHIKTLFLWQVIQQDPSYWSNSPKDIFIEV 321
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,786,857
Number of Sequences: 53049
Number of extensions: 666398
Number of successful extensions: 2011
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2011
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3314233461
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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