Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0226
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    33   0.21 
Z83109-9|CAJ43453.1|  371|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U50135-3|AAA93454.1|  329|Caenorhabditis elegans Squashed vulva ...    28   7.9  
U28928-11|AAA68342.3|  824|Caenorhabditis elegans Hypothetical p...    28   7.9  
AL132949-11|CAB70104.2|  927|Caenorhabditis elegans Hypothetical...    28   7.9  

>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +3

Query: 279 FDSDHVHAVLISETFLKPSLPSSQYALPGYKLLRNDRTGR-----GCGGVAIYLRADLKH 443
           F S  +  +L++ETFL   +PSS +  P    LR DR          GGVA+  ++ L  
Sbjct: 340 FASSDIDILLLTETFLSNIVPSSLFNAPNMSFLRLDRNPELHSKVSGGGVAVMHKSSLNI 399

Query: 444 AVVD 455
            + D
Sbjct: 400 TLRD 403


>Z83109-9|CAJ43453.1|  371|Caenorhabditis elegans Hypothetical
           protein F44G3.14 protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 148 FDNDDSTHLRDQLAYSLSSSSKCFNVVHINAQSVHAIFLIYY 273
           F  +D+  LRD L  S+   + CF     N   +  +F++ Y
Sbjct: 293 FSKEDAVKLRDLLTKSVDFENGCFKFPETNIIEIVRVFILDY 334


>U50135-3|AAA93454.1|  329|Caenorhabditis elegans Squashed vulva
           protein 7 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = +2

Query: 83  TLMIIF---CHVLLLFPLIEALLVRLIMTIPLIYAINLL 190
           T++I+F      ++ FP +++ + R IM +PL+Y  NL+
Sbjct: 53  TILILFFAKMFRIVQFPSLDSSIPRKIMPLPLLYFFNLI 91


>U28928-11|AAA68342.3|  824|Caenorhabditis elegans Hypothetical
           protein C44B7.11 protein.
          Length = 824

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +3

Query: 399 GCGGVAIYLRADLKHAVVDQSPSEYTQSAEHLFIEVTSSTPRYFLEF 539
           G G +++Y+  D    + + S ++     E++F+  T STP    E+
Sbjct: 707 GTGQISVYIIPDTTWLITNTSVTQPKTPQENMFLYYTCSTPNNICEW 753


>AL132949-11|CAB70104.2|  927|Caenorhabditis elegans Hypothetical
           protein Y53F4B.13 protein.
          Length = 927

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 170 IYAINLLIPFRLLLNVSTSFISMLKVFTPFS*SIIFL*LRPC 295
           +Y   LL+   ++      F  +  +FTPFS  +I+L +R C
Sbjct: 398 LYLCQLLVSLCIVREGGNFFCKLFDIFTPFSVGLIYL-MRVC 438


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,399,355
Number of Sequences: 27780
Number of extensions: 343245
Number of successful extensions: 942
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)