Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0226
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22530.1 68417.m03251 embryo-abundant protein-related similar...    29   2.4  
At5g11230.1 68418.m01312 phosphate translocator-related low simi...    28   5.6  
At3g25680.1 68416.m03196 expressed protein                             28   5.6  
At4g32390.1 68417.m04612 phosphate translocator-related low simi...    28   7.4  
At4g19560.1 68417.m02876 cyclin family protein similar to SP|O88...    28   7.4  
At3g49590.2 68416.m05420 expressed protein                             27   9.8  
At3g49590.1 68416.m05419 expressed protein                             27   9.8  

>At4g22530.1 68417.m03251 embryo-abundant protein-related similar to
           embryo-abundant protein [Picea glauca] GI:1350531
          Length = 261

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +3

Query: 264 DLLSSFDSDHVHAVLISETFLKPSLPSSQYALPGYKLLRNDRTGRGCGGVAIYLRADLKH 443
           D++ + + D V    I+ET      P SQY L GYK L       G G     +  ++K 
Sbjct: 141 DMVVNPEFDSVMTRFIAETLPYCKFPESQYFLDGYKTLPFPFESVGLGSEGKPMELEMKK 200

Query: 444 AV 449
            V
Sbjct: 201 TV 202


>At5g11230.1 68418.m01312 phosphate translocator-related low
           similarity to phosphoenolpyruvate/phosphate translocator
           precursor [Mesembryanthemum crystallinum] GI:9295275,
           SP|P52178 Triose phosphate/phosphate translocator,
           non-green plastid, chloroplast precursor (CTPT)
           {Brassica oleracea}
          Length = 351

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 143 VRLIMTIPLIYAINLLIPFRLLLNVSTSFISMLKVFTP 256
           +R ++ I  +YA++L +     + +S SFI MLK   P
Sbjct: 86  LRSVVPIGALYALSLWLSNSAYIYLSVSFIQMLKALMP 123


>At3g25680.1 68416.m03196 expressed protein
          Length = 558

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +2

Query: 116 LFPLIEALLVRLIMTIPLIYAINLLIPFRLLLNVS-TSFIS 235
           LFP I  LL+R  +T+PL+   +    FR++ ++S TS++S
Sbjct: 15  LFPKITPLLIRHRLTLPLLVPPHKPPRFRIVASLSGTSWVS 55


>At4g32390.1 68417.m04612 phosphate translocator-related low
           similarity to phosphoenolpyruvate/phosphate translocator
           precursor [Mesembryanthemum crystallinum] GI:9295275,
           SP|P52178 Triose phosphate/phosphate translocator,
           non-green plastid, chloroplast precursor (CTPT)
           {Brassica oleracea}
          Length = 350

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 143 VRLIMTIPLIYAINLLIPFRLLLNVSTSFISMLKVFTP 256
           +R ++ I  +Y+++L +     + +S SFI MLK   P
Sbjct: 86  IRSVVPIGALYSLSLWLSNSAYIYLSVSFIQMLKALMP 123


>At4g19560.1 68417.m02876 cyclin family protein similar to SP|O88874
           Cyclin K (Fragment) {Mus musculus}; contains Pfam
           profile PF00134: Cyclin, N-terminal domain
          Length = 474

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 560 CVLKDYKKLQEVSWCAGCYLYKQVLSRLSIFAW*LINDCM 441
           C+   YK L E       Y+ +   ++L+ FAW  +NDC+
Sbjct: 170 CISHPYKPLVEA---IKKYMVEDAKTQLAQFAWNFVNDCL 206


>At3g49590.2 68416.m05420 expressed protein 
          Length = 603

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 339 PSSQYALPGYKLLRNDRTGRGCGGV 413
           PSSQ +LPG  L R+ R+G    G+
Sbjct: 405 PSSQDSLPGIALYRSSRSGESPSGL 429


>At3g49590.1 68416.m05419 expressed protein 
          Length = 603

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 339 PSSQYALPGYKLLRNDRTGRGCGGV 413
           PSSQ +LPG  L R+ R+G    G+
Sbjct: 405 PSSQDSLPGIALYRSSRSGESPSGL 429


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,358,476
Number of Sequences: 28952
Number of extensions: 316136
Number of successful extensions: 948
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)