Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0225
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S...    26   1.4  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   4.2  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    24   5.5  

>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 389

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 64  YYILSYESSNLKRENQLYGLRVLCINFLIKMI 159
           Y+   YE++N   E+ +Y  ++    F+I M+
Sbjct: 113 YWQPEYETANTNNESYIYNTQISAAQFIIDMV 144


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 215 QESSY*NLEV*LLIETGHCGRTQPSETDCCSRTNYQTAP 331
           + S + NLE   L E  HCG    S+TD     N Q  P
Sbjct: 730 ENSGFTNLEKSFLSEESHCG--LESKTDSLVIKNIQKVP 766


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -1

Query: 317  NLSESNSLSQTVVCVRNGLFL*AVKPPDFNNCFLEPQPSVVARIAPKTNNAKGIILIK 144
            N S +N   QTVV       L  +  P+F +  +E    V  +   K+N   G + +K
Sbjct: 1891 NFSATNEEPQTVVSWHIKSHLPPIIQPEFQSWIVEFIEEVYKQKLEKSNTKVGFVRVK 1948


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,344,236
Number of Sequences: 5004
Number of extensions: 23315
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)