Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0225
         (338 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19566| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  
SB_57323| Best HMM Match : ShTK (HMM E-Value=0)                        26   9.0  

>SB_19566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 169 LFVLGAILATTEGCGSRKQLLKSGGLTAYRNRPLRTHTTV*DRLLLSDKLPNSP 330
           L V+G  +A    CG       SG L  +RN  +R   T    +L+ D LP++P
Sbjct: 107 LSVIGEAVAALVFCGPHNPNSLSGSLR-WRNDVIRAKGTAIPMVLVVDNLPSNP 159


>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1743

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 129  VVYKLFN*NDSLSVVCFGSYSRNNRRLWLKKAVIKI 236
            +++KL   +  LS  C G YSR+N   WL K V+++
Sbjct: 1395 LIFKLSELSLRLSKSCKG-YSRSNDLRWLTKRVLEM 1429


>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
          Length = 911

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 49  YE*APYYILSYESSNLKRENQLYG 120
           YE +P Y+  +   ++K+ N LYG
Sbjct: 290 YEISPVYLREFSPQDIKKINMLYG 313


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,856,060
Number of Sequences: 59808
Number of extensions: 165238
Number of successful extensions: 313
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)