Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0225
(338 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr... 33 0.052
Z70308-3|CAA94350.1| 207|Caenorhabditis elegans Hypothetical pr... 29 1.1
AF106579-7|AAC78199.2| 391|Caenorhabditis elegans Hypothetical ... 28 2.0
AF162673-1|AAF80461.1| 568|Caenorhabditis elegans CNT-like nucl... 27 2.6
AF016413-5|AAB65255.1| 568|Caenorhabditis elegans Hypothetical ... 27 2.6
AC006655-3|AAF39874.1| 208|Caenorhabditis elegans Hypothetical ... 27 2.6
Z82092-1|CAB05010.1| 196|Caenorhabditis elegans Hypothetical pr... 27 4.5
AL033514-36|CAH19095.1| 222|Caenorhabditis elegans Hypothetical... 27 4.5
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 26 7.9
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 26 7.9
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 26 7.9
>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical protein
W05B2.2 protein.
Length = 1278
Score = 33.1 bits (72), Expect = 0.052
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 313 CPRATVCLRRLCASAMACFYKQSN 242
CP+ TV RR+CAS FYK N
Sbjct: 1251 CPKGTVQFRRMCASVCPLFYKNLN 1274
>Z70308-3|CAA94350.1| 207|Caenorhabditis elegans Hypothetical
protein F49E11.6 protein.
Length = 207
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 258 KQAIADAHNRLRQTVALG 311
+QAI DAHN+LR ++A G
Sbjct: 23 QQAIVDAHNKLRSSIAKG 40
>AF106579-7|AAC78199.2| 391|Caenorhabditis elegans Hypothetical
protein F54E2.1 protein.
Length = 391
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 82 RNLEYNMVLTRNYETVNFLFNKFEISG 2
RN+++N T+NY+T F E+ G
Sbjct: 236 RNIDFNGYSTQNYQTTGFFMKSKEVVG 262
>AF162673-1|AAF80461.1| 568|Caenorhabditis elegans CNT-like
nucleoside transporter protein.
Length = 568
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 298 VCLRRLCASAMACFYKQSNLQILIT 224
V LR LCA A+ACF + ILI+
Sbjct: 525 VMLRALCAGAIACFMNATVAGILIS 549
>AF016413-5|AAB65255.1| 568|Caenorhabditis elegans Hypothetical
protein F27E11.1 protein.
Length = 568
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 298 VCLRRLCASAMACFYKQSNLQILIT 224
V LR LCA A+ACF + ILI+
Sbjct: 525 VMLRALCAGAIACFMNATVAGILIS 549
>AC006655-3|AAF39874.1| 208|Caenorhabditis elegans Hypothetical
protein H10D18.2 protein.
Length = 208
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +3
Query: 240 RFDCL*KQAIADAHNRLRQTVALGQI----TKQPPAA 338
+F + AI AHN LR +ALG T +PPAA
Sbjct: 17 QFSSTAQTAIVKAHNDLRSAIALGNYDAAGTIEPPAA 53
>Z82092-1|CAB05010.1| 196|Caenorhabditis elegans Hypothetical
protein ZK384.1 protein.
Length = 196
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Frame = +3
Query: 258 KQAIADAHNRLRQTVALGQI----TKQPPA 335
+Q + D HN+LR VALG T +PPA
Sbjct: 23 RQQVLDFHNKLRSQVALGVFSANGTIKPPA 52
>AL033514-36|CAH19095.1| 222|Caenorhabditis elegans Hypothetical
protein Y75B8A.39 protein.
Length = 222
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +1
Query: 106 NQLYGLRVLCINFLIK-MIPLALFV 177
NQ+Y LRV CI ++I +PL + +
Sbjct: 181 NQIYNLRVSCIQYVITFQLPLIMHI 205
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/26 (42%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Frame = -2
Query: 331 GGCLVIC--PRATVCLRRLCASAMAC 260
GGC C PR C RR C C
Sbjct: 80 GGCGCCCCRPRCCCCCRRCCTCCRTC 105
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/26 (42%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Frame = -2
Query: 331 GGCLVIC--PRATVCLRRLCASAMAC 260
GGC C PR C RR C C
Sbjct: 81 GGCGCCCCRPRCCCCCRRCCTCCRTC 106
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/26 (42%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Frame = -2
Query: 331 GGCLVIC--PRATVCLRRLCASAMAC 260
GGC C PR C RR C C
Sbjct: 82 GGCGCCCCRPRCCCCCRRCCTCCRTC 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,472,742
Number of Sequences: 27780
Number of extensions: 133551
Number of successful extensions: 327
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -