Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0225
         (338 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10060.1 68417.m01645 expressed protein contains Pfam domain ...    27   4.2  
At1g77610.1 68414.m09036 glucose-6-phosphate/phosphate transloca...    26   5.6  
At1g30010.1 68414.m03670 intron maturase, type II family protein...    26   7.4  
At5g38260.1 68418.m04612 serine/threonine protein kinase, putati...    25   9.7  

>At4g10060.1 68417.m01645 expressed protein contains Pfam domain
           PF04685: Protein of unknown function, DUF608
          Length = 912

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 145 LIKMIPLALFVLGAILATTEGCGSRKQLLKSGGLTAYRNRPLRTH 279
           L  M PLA++ +   L  T+  G  KQ L +G      N  LR H
Sbjct: 832 LCYMRPLAIWAIQWALTRTQSFGEEKQKLVAGDEEEESNLLLRQH 876


>At1g77610.1 68414.m09036 glucose-6-phosphate/phosphate
           translocator-related similar to
           glucose-6-phosphate/phosphate-translocators from
           [Mesembryanthemum crystallinum] GI:9295277, [Solanum
           tuberosum] GI:2997593, [Pisum sativum] GI:2997591;
           contains Pfam profile PF00892: Integral membrane protein
          Length = 336

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 73  LSYESSNLKRENQLYGLRVLCINFLIKMIPLALFVLGAILATTEGCG 213
           L+  +  +  E+ L+G +   IN +  M P A  +LG      EG G
Sbjct: 165 LATSTKTILAESLLHGYKFDSINTVYYMAPFATMILGIPALLLEGSG 211


>At1g30010.1 68414.m03670 intron maturase, type II family protein
           similar to SP|Q57005 Group II intron-encoded protein
           ltrA  {Lactococcus lactis subsp}; contains Pfam profiles
           PF01348: Type II intron maturase, PF00078: Reverse
           transcriptase (RNA-dependent DNA polymerase
          Length = 711

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 303 QQSVSDGCVRPQWPVSISS 247
           ++S+ DGC  P WP  + S
Sbjct: 372 KESIEDGCHNPAWPEFVPS 390


>At5g38260.1 68418.m04612 serine/threonine protein kinase, putative
           similar to receptor serine/threonine kinase PR55K
           gi|1235680|gb|AAC49208; contains protein kinase domain,
           Pfam:PF00069; contains serine/threonine protein kinase
           domain, INTERPRO:IPR002290
          Length = 638

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -1

Query: 224 CFLEPQPSVVARIAPKTNNAKGIILIKKFIHNTLR 120
           CF   +      + P+ NN KG++ +K++ +  +R
Sbjct: 283 CFFFQKRRTSHHLRPRDNNLKGLVQLKQYSYAEVR 317


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,930,030
Number of Sequences: 28952
Number of extensions: 120497
Number of successful extensions: 229
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)