Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0224
         (639 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core eudico...    62   8e-09
UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=...    46   8e-04
UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to endonuclea...    45   0.002
UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to endonuclea...    41   0.022
UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to endonuclea...    40   0.067
UniRef50_Q4SQJ7 Cluster: Chromosome 17 SCAF14532, whole genome s...    37   0.47 
UniRef50_UPI0000E4898C Cluster: PREDICTED: similar to fibropelli...    35   1.4  
UniRef50_Q6L4B8 Cluster: Polyprotein, putative; n=1; Solanum dem...    34   2.5  
UniRef50_Q23BR4 Cluster: Putative uncharacterized protein; n=1; ...    33   5.8  

>UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core
           eudicotyledons|Rep: Polyprotein, putative - Solanum
           demissum (Wild potato)
          Length = 868

 Score = 62.5 bits (145), Expect = 8e-09
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
 Frame = -3

Query: 247 WYGHVMRREKMHVTRRCMKMVLQG-KGGRGRP*KTWMECVNDDMRERGVSVEMTADRREW 71
           W+GHV RR      RRC  MV++G + GRGRP K W E +  D+    ++ +MT DR+EW
Sbjct: 624 WFGHVKRRSADAPVRRCEVMVVEGTRRGRGRPKKYWEEVIRQDLAMLHITEDMTLDRKEW 683

Query: 70  KRK 62
           + +
Sbjct: 684 RSR 686


>UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=6;
           Papilionoideae|Rep: Reverse transcriptase family member
           - Glycine max (Soybean)
          Length = 377

 Score = 46.0 bits (104), Expect = 8e-04
 Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = -3

Query: 247 WYGHVMRREKMHVTRRCMKMVL-QGKGGRGRP*KTWMECVNDDMRERGVSVEMTADRREW 71
           W+GHV RR    V RR  +M   Q   GRGRP KT  E +  D+   G+   M  DR  W
Sbjct: 308 WFGHVERRPVDSVLRRVDQMERRQTIRGRGRPKKTIREVIKKDLEINGLDRSMVLDRTLW 367

Query: 70  KRKFSCA-PT 44
           ++    A PT
Sbjct: 368 RKLIHVADPT 377


>UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to
            endonuclease-reverse transcriptase; n=5;
            Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
            endonuclease-reverse transcriptase - Strongylocentrotus
            purpuratus
          Length = 1030

 Score = 44.8 bits (101), Expect = 0.002
 Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
 Frame = -3

Query: 253  VVWYGHVMRREKMHVTRRCMKMVLQGKGGRGRP*KTWMECVNDDMRERGV-----SVEMT 89
            + ++GHV+R +     +  ++  + G   RGRP K W++C+++D + R +     +  + 
Sbjct: 947  IKYFGHVLRMKPTRYPKIAVEGKVTGNRPRGRPPKRWLDCISEDCKARSIPRLTDASRLA 1006

Query: 88   ADRREW 71
            ADR+ W
Sbjct: 1007 ADRKTW 1012


>UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to
            endonuclease-reverse transcriptase; n=2;
            Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
            endonuclease-reverse transcriptase - Strongylocentrotus
            purpuratus
          Length = 958

 Score = 41.1 bits (92), Expect = 0.022
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = -3

Query: 247  WYGHVMRREKMHVTRRCMKMVLQGKGGRGRP*KTWMECVNDDMRERGV-----SVEMTAD 83
            ++GH+ R          +   + GK  RGRP K W +C+  D + R V     +  +T D
Sbjct: 862  YFGHINRMNSKRYPHILLNGNIHGKRPRGRPAKRWTDCIKADCKNRQVDSLTKATRLTED 921

Query: 82   RREWK 68
            R+ W+
Sbjct: 922  RKVWQ 926


>UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to
           endonuclease-reverse transcriptase, partial; n=7;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           endonuclease-reverse transcriptase, partial -
           Strongylocentrotus purpuratus
          Length = 787

 Score = 39.5 bits (88), Expect = 0.067
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -3

Query: 262 KR*VVWYGHVMRREKMHVTRRCMKMVLQGKGGRGRP*KTWMECVNDDMRERGVSVEMTA- 86
           KR + W+GHV+R     +  +  +    G+  RGRP K W + V  D+       E  A 
Sbjct: 444 KRCLKWFGHVLRMPHHRLPYQAFQNDFNGRRPRGRPPKRWKDQVQYDVGLSTQEAEQRAQ 503

Query: 85  DRREW 71
           DR +W
Sbjct: 504 DRSDW 508


>UniRef50_Q4SQJ7 Cluster: Chromosome 17 SCAF14532, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 17 SCAF14532, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 811

 Score = 36.7 bits (81), Expect = 0.47
 Identities = 21/47 (44%), Positives = 29/47 (61%)
 Frame = +2

Query: 281 TKRKAVSQNLHKCLFASPALSQVFLEPLFLKIELVNFRSGLFCNFRK 421
           T RK  ++N H CLF  P++S    +P F  ++L+NFRS L   FRK
Sbjct: 293 TDRKFSAENNHSCLFF-PSVS----DPSFPAVDLMNFRSSLSQGFRK 334


>UniRef50_UPI0000E4898C Cluster: PREDICTED: similar to fibropellin
           Ia; n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
           similar to fibropellin Ia - Strongylocentrotus
           purpuratus
          Length = 1096

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = -3

Query: 184 LQGKGGRGRP*KTWMECVNDDMRERGV-----SVEMTADRREWK 68
           + GK  RGRP K W +C+  D   R V     +  +T DR+ W+
Sbjct: 22  VHGKHPRGRPAKRWTDCIKADCNNRQVDSLTKATRLTEDRKVWR 65


>UniRef50_Q6L4B8 Cluster: Polyprotein, putative; n=1; Solanum
           demissum|Rep: Polyprotein, putative - Solanum demissum
           (Wild potato)
          Length = 115

 Score = 34.3 bits (75), Expect = 2.5
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 247 WYGHVMRREKMHVTRRCMKMVLQGK-GGRGRP*KTWME 137
           W+GHVMRR      RRC ++ + GK  G GR    W E
Sbjct: 77  WFGHVMRRSTEAPVRRCERLDVVGKRRGSGRLKNYWGE 114


>UniRef50_Q23BR4 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1539

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +2

Query: 362 LFLKIELVNFRSGLFCNFRKKIERLIIAVLCLESK-ATTMERKTLISESI 508
           +FLKI+   F  G+  NF KK +  I + +CL +K + T +R   IS+ I
Sbjct: 4   IFLKIQFQKFIYGIVANFIKKSDENIHSFICLYNKQSQTKQRGENISDPI 53


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 541,134,804
Number of Sequences: 1657284
Number of extensions: 9677480
Number of successful extensions: 23289
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 22821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23284
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)