Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0224
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0441 - 5750765-5750822,5750936-5751026,5751112-5751313,575...    29   4.1  
06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219...    28   7.2  
05_05_0257 + 23651353-23651733,23651827-23651958                       28   7.2  

>04_01_0441 -
           5750765-5750822,5750936-5751026,5751112-5751313,
           5751392-5752033,5752175-5752409,5752500-5752619,
           5752864-5753282
          Length = 588

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 507 IDSLINVFRSIVVAFDSRQRTAIIKRSIFFLKLQNNPE 394
           I SL ++F  I + + SRQRT + K+ +    + +NP+
Sbjct: 498 IASLPSIFDIIFLIYQSRQRTVMTKQELIHKIIASNPK 535


>06_03_0181 +
           17618888-17619125,17621503-17621683,17621765-17621906,
           17622002-17622071,17622162-17622307,17623382-17623948,
           17624558-17624641,17624723-17624797,17625049-17625217,
           17625395-17625586,17625662-17626053
          Length = 751

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 47  GGTTKFSLPFSSISRHLNTHSSLSHIVIHTLHPCLLWSTSSPF 175
           GG T   + F  +  HL T   LSH++I  L    LWS ++ F
Sbjct: 97  GGATVIWILFEVLDYHLLT--LLSHVMIGALAILFLWSKATTF 137


>05_05_0257 + 23651353-23651733,23651827-23651958
          Length = 170

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 599 VYFWIGVKANSNLYGVRTAPLRLPPARGVLELIR 498
           +YFW+ +    +  GV    LRLP  RG+ E +R
Sbjct: 43  LYFWLPLV---DAKGVHRGDLRLPDVRGIAEAVR 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,943,326
Number of Sequences: 37544
Number of extensions: 274467
Number of successful extensions: 594
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)