Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0224
(639 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011) 56 3e-08
SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38) 43 2e-04
SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 7e-04
SB_33808| Best HMM Match : Fibrinogen_C (HMM E-Value=0) 41 0.001
SB_24663| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05) 40 0.001
SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25) 39 0.004
SB_21570| Best HMM Match : AT_hook (HMM E-Value=2) 39 0.004
SB_33679| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.064
SB_21608| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_45459| Best HMM Match : RVT_1 (HMM E-Value=6e-36) 32 0.34
SB_8130| Best HMM Match : RVT_1 (HMM E-Value=8e-35) 32 0.45
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) 31 0.60
SB_13837| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_9819| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_23180| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_36818| Best HMM Match : RVT_1 (HMM E-Value=8e-35) 28 5.6
SB_10620| Best HMM Match : zf-C2H2 (HMM E-Value=0.012) 28 5.6
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_39537| Best HMM Match : JmjC (HMM E-Value=0.00017) 28 7.4
SB_31545| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_6541| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 27 9.7
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 27 9.7
SB_31784| Best HMM Match : RVT_1 (HMM E-Value=2e-35) 27 9.7
SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)
Length = 634
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/73 (36%), Positives = 40/73 (54%)
Frame = -3
Query: 262 KR*VVWYGHVMRREKMHVTRRCMKMVLQGKGGRGRP*KTWMECVNDDMRERGVSVEMTAD 83
+R + WYGHV R R +++GK RGRP K W E + +D++ G++ T D
Sbjct: 557 RRRLRWYGHVQRSTSW--IRWIRDFIIEGKRTRGRPRKNWHEVLREDLKLAGLTPHDTQD 614
Query: 82 RREWKRKFSCAPT 44
R WK K + AP+
Sbjct: 615 RVRWKLKLNHAPS 627
>SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38)
Length = 492
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = -3
Query: 247 WYGHVMRREKMHVTRRCMKMVLQGKGGRGRP*KTWMECVNDDMRERGVS---VEMTADRR 77
W GH +R+ ++TR+ + QGK RGRP TW ++ D ++ G + +E A R
Sbjct: 414 WIGHTLRKPATNITRQSLTWNPQGKRKRGRPRNTWRRDLDADAKQMGKTWGQLERLAQNR 473
Query: 76 E-WK 68
+ W+
Sbjct: 474 DAWR 477
>SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = -3
Query: 247 WYGHVMRREKMHVTRRCMKMVLQGKGGRGRP*KTWMECVNDDMRERGVSV----EMTADR 80
W GHV+R ++ + + ++ G+ GRP TW + ++ +++ M DR
Sbjct: 49 WLGHVLRMDQRRIPKVALRWTPPGRRKPGRPKTTWRRTILSELSGHQLTLAEAQHMARDR 108
Query: 79 REWKR 65
R+WKR
Sbjct: 109 RKWKR 113
>SB_33808| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
Length = 280
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Frame = -3
Query: 262 KR*VVWYGHVMRREKMHVTRRCMKMVLQGKGGRGRP*KTWMECVNDDMRERGV----SVE 95
+R + W GHV+R + + + GK GRP TW + ++ E G+ +++
Sbjct: 197 RRRLKWLGHVLRMGQERIPKTSALWTPIGKRKPGRPKTTWRRTIQAELLEMGLTWGEALK 256
Query: 94 MTADRREWKRKFSCA-PT*SD 35
+ DR+EW+ + + PT D
Sbjct: 257 VAKDRQEWRHRVAALFPTRED 277
>SB_24663| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05)
Length = 666
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = -3
Query: 247 WYGHVMRREKMHVTRRCMKMVLQGKGGRGRP*KTWMECVNDDMRERGV----SVEMTADR 80
W GHV+R + + + GK GRP TW + ++ E G+ ++++ DR
Sbjct: 588 WLGHVLRMGQERIPKTSALWTSIGKRKLGRPKTTWRRTIQAELLEMGLTWGKALKVAKDR 647
Query: 79 REWKRKFSCA-PT*SD 35
+EW+ + + PT D
Sbjct: 648 QEWRHRVAALFPTRED 663
>SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25)
Length = 1641
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -3
Query: 247 WYGHVMRREKMHVTRRCMKMVLQGKGGRGRP*KTWMECVNDDMRERGVSVEMTAD 83
W GH + + ++TR+ + +GK RGRP TW ++ D + G +++ D
Sbjct: 169 WIGHTLPKPATNITRQSLTWNPKGKRKRGRPRNTWRRDLDADAKHMGKTMKDAVD 223
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 247 WYGHVMRREKMHVTRRCMKMVLQGKGGRGRP*KTWMECVNDDMRERG 107
W GH + + ++TR+ + +GK RGRP TW ++ D + G
Sbjct: 529 WIGHTLPKPATNITRQSLTWNPKGKRKRGRPRNTWRRDLDADAKHMG 575
>SB_21570| Best HMM Match : AT_hook (HMM E-Value=2)
Length = 148
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -3
Query: 247 WYGHVMRREKMHVTRRCMKMVLQGKGGRGRP*KTWMECVNDDMRERG 107
W H +R+ ++TR+ + QGK RGRP TW ++ D + G
Sbjct: 87 WIDHTLRKPATNITRQSLTWNPQGKRKRGRPRNTWRRDLDADAKHMG 133
>SB_33679| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = -3
Query: 247 WYGHVMRREKMHVTRRCMKMVLQGKGGRGRP*KTWMECVNDDMRERGVSVEMTADRR 77
W+GHV R + + G+ +GRP KTW + D++ G+ + ++R+
Sbjct: 53 WFGHVERAQAPNPVSSIRDFEPGGRRMKGRPRKTWADATLSDLKTAGLKASVASNRK 109
>SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 34.7 bits (76), Expect = 0.064
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = -3
Query: 247 WYGHVMRREKMHVTRRCMKMVLQGKGGRGRP*KTWMECVNDDMRERGVS----VEMTADR 80
W GHV+R ++ + + + G+ GRP T + +++ G+S + +R
Sbjct: 49 WLGHVLRMDQQRIPKIDLHWTPAGRRKPGRPKTTLRRTIASKLKDLGLSWGHAQYLARNR 108
Query: 79 REWKR 65
REW+R
Sbjct: 109 REWRR 113
>SB_21608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -3
Query: 262 KR*VVWYGHVMRREKMHVTRRCMKMVLQGKGGRGRP*KTWMECVNDDMRERGVS 101
+R + W GHV+R + + + GK GRP TW + ++ E G++
Sbjct: 44 RRRLKWLGHVLRMGQERIPKTSALWTPIGKRKPGRPKTTWRRTIQAELLEMGLT 97
>SB_45459| Best HMM Match : RVT_1 (HMM E-Value=6e-36)
Length = 1346
Score = 32.3 bits (70), Expect = 0.34
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 129 FTHSIHVFYGRPLPPLPCNTIFIHLLVTCIFSLRITCPYHT 251
F H H Y PP N++ I+ + CI L I ++T
Sbjct: 401 FIHLFHFMYSNNKPPFTDNSVLINFAIRCIIGLCIDVVFNT 441
>SB_8130| Best HMM Match : RVT_1 (HMM E-Value=8e-35)
Length = 869
Score = 31.9 bits (69), Expect = 0.45
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -3
Query: 247 WYGHVMRREKMHVTRRCMKMVL-QGKGGRGRP*KTWMECVNDDMR 116
WYGHV+R E+ + R+ + L G +GRP K + + + +++
Sbjct: 783 WYGHVIRMEESRIPRQVLYSELASGYRKKGRPKKRYKDNLKSNLK 827
>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
Length = 129
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +2
Query: 26 LHLIRLGGGTTKFSLPFSSISRHLNTHSSLSHIVIHTLHPCLLWSTSSPFTLQY 187
+HL T +L S+++ THS+L+H ++ H L +ST + TL Y
Sbjct: 8 IHLTLTHSNLTHLTLTHSNLTHSTLTHSNLTH--LNLTHSTLTYSTLTHLTLTY 59
>SB_13837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 31.5 bits (68), Expect = 0.60
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Frame = -3
Query: 205 RRCMKMVLQ----GKGGRGRP*KTWMECVNDDMRERGVSV----EMTADRREWKR 65
RR +K+ L+ G+ GRP TW + ++ E +++ M DRR+WKR
Sbjct: 4 RRILKVALRWTQPGRRKPGRPKTTWRRTILSELSEHQLTLAEAQHMARDRRKWKR 58
>SB_9819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = -3
Query: 223 EKMHVTRRCMKMVLQGKGGRGRP*KTWMECVNDDMRERGVSV----EMTADRREWKR 65
++ +++ ++ G+ GRP TW + ++ + +++ M DRR+WKR
Sbjct: 2 DQRRISKVALRWTPPGRRKPGRPKTTWRRTILSELSKHQLTLAEAQHMARDRRKWKR 58
>SB_23180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 247 WYGHVMRREKMHVTRRCMKMVLQGKGGRGRP 155
W GH + + ++TR+ + +GK RGRP
Sbjct: 195 WIGHTLPKPATNITRQSLTWNPKGKRKRGRP 225
>SB_36818| Best HMM Match : RVT_1 (HMM E-Value=8e-35)
Length = 629
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 247 WYGHVMRREKMHVTRRCMKMVL-QGKGGRGRP*KTWMECVNDDMR 116
W GHV+R E+ + R+ + L G +GRP K + + + +++
Sbjct: 504 WSGHVIRMEESRIPRQVLYSELASGYRKKGRPKKRYKDNLKSNLK 548
>SB_10620| Best HMM Match : zf-C2H2 (HMM E-Value=0.012)
Length = 159
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 247 WYGHVMRREKMHVTRRCMKMVL-QGKGGRGRP*KTWMECVNDDMR 116
W GHV+R E+ + R+ + L G +GRP K + + + +++
Sbjct: 34 WSGHVIRMEESRIPRQVLYSELASGYRKKGRPKKRYKDNLKSNLK 78
>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3669
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 247 WYGHVMRREKMHVTRRCMKMVL-QGKGGRGRP*KTWMECVNDDMR 116
W GHV+R E+ + R+ + L G +GRP K + + + +++
Sbjct: 3274 WSGHVIRMEESRIPRQVLYSELASGYRKKGRPKKRYKDNLKSNLK 3318
>SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2905
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 275 SETKRKAVSQNLHKCLFASPALSQVFLEPLFLKIELVNFRSG-LFCN 412
S+ K K + N + +SP L + FL+ LF+ ++ + R G L+CN
Sbjct: 856 SDIKIKLKTLNEDRVFESSPILVRQFLQTLFISVDF-SIREGFLYCN 901
>SB_39537| Best HMM Match : JmjC (HMM E-Value=0.00017)
Length = 113
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 368 EKEVLKIPGSMQDSRKDIYEGSGKLL 291
E +V K PGS++ S+ DI++G ++
Sbjct: 6 EADVAKFPGSLRPSQADIHDGKDSMV 31
>SB_31545| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 102
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 247 WYGHVMRREKMHVTRRCMKMVLQGKG 170
W G + R +KM R M+M+L+ KG
Sbjct: 3 WCGKIFRMKKMQNPNRLMRMLLKRKG 28
>SB_6541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 247 WYGHVMRREKMHVTRRCM-KMVLQGKGGRGRP*KTWMECVNDDMR 116
W GHV+R E+ + R+ + + G +GRP K + + + +++
Sbjct: 676 WSGHVIRMEESRIPRQVFYRELASGYRKKGRPKKRYKDNLKSNLK 720
>SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 904
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 490 VD*RINSKTPRAGGKRRGAVLTPYKFELAFTPIQ 591
+D ++S P G R+G+VL P F L F P +
Sbjct: 592 IDGVLSSSQPLRYGVRQGSVLGPLLFSLFFAPTE 625
>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 903
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 490 VD*RINSKTPRAGGKRRGAVLTPYKFELAFTPIQ 591
+D ++S P G R+G+VL P F L F P +
Sbjct: 591 IDGVLSSSQPLRYGVRQGSVLGPLLFSLFFAPTE 624
>SB_31784| Best HMM Match : RVT_1 (HMM E-Value=2e-35)
Length = 963
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 247 WYGHVMRREKMHVTRRCMKMVL-QGKGGRGRP*KTWMECVNDDMR 116
W GHV+R E+ + R+ L G +GRP K + + + +++
Sbjct: 838 WSGHVIRMEESRIPRQVFYSELASGYRKKGRPKKRYKDNLKSNLK 882
>SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 247 WYGHVMRREKMHVTRRCMKMVL-QGKGGRGRP*KTWMECVNDDMR 116
W GHV+R E+ + R+ L G +GRP K + + + +++
Sbjct: 509 WSGHVIRMEESRIPRQVFYSELASGYRKKGRPKKRYKDNLKSNLK 553
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,033,524
Number of Sequences: 59808
Number of extensions: 325860
Number of successful extensions: 808
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -