BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0224 (639 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 1.9 DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 1.9 DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 5.8 >DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine receptor alpha4subunit protein. Length = 569 Score = 23.4 bits (48), Expect = 1.9 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = +3 Query: 147 VFYGRPLPPLPCNT 188 + +G PLPPLP +T Sbjct: 435 LIHGPPLPPLPLHT 448 >DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine receptor alpha4subunit protein. Length = 569 Score = 23.4 bits (48), Expect = 1.9 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = +3 Query: 147 VFYGRPLPPLPCNT 188 + +G PLPPLP +T Sbjct: 435 LIHGPPLPPLPLHT 448 >DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated ion channel subunit protein. Length = 510 Score = 21.8 bits (44), Expect = 5.8 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 5/54 (9%) Frame = +2 Query: 374 IELVNFRSGLFC-----NFRKKIERLIIAVLCLESKATTMERKTLISESIPRLR 520 I++ RS L C N ER + V + SK +TMER+T IP+ R Sbjct: 375 IDVSRRRSSLICDVYGVNESVSYERGSMTV-SVTSKPSTMERQTQTEVWIPKWR 427 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 153,768 Number of Sequences: 438 Number of extensions: 2873 Number of successful extensions: 20 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 20 length of database: 146,343 effective HSP length: 55 effective length of database: 122,253 effective search space used: 19193721 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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