Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0224
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10550.1 68416.m01266 expressed protein                             29   3.4  
At5g44510.1 68418.m05453 disease resistance protein (TIR-NBS-LRR...    27   7.9  

>At3g10550.1 68416.m01266 expressed protein
          Length = 634

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 398 GLFCNFRKKIERLIIAVLCLESKATTMERKTL-ISESIPRLRVLAANG 538
           GL  N R  ++  ++A  C +      ER+ L I+++ PR   L ANG
Sbjct: 81  GLMMNMRSNLDEKLVAAFCSQLPGAKGERRKLYIADARPRKNAL-ANG 127


>At5g44510.1 68418.m05453 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1187

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 284 KRKAVSQNLHKCLFASPALSQVFLEPLFLKIELVNFRSGLFCNFRKKIER 433
           + K +S +L      S +LSQ +L P+FL     + R GL  + +K+ +R
Sbjct: 17  RNKNISSSLSSSSPPS-SLSQNWLHPVFLSFRGEDVRKGLLSHIQKEFQR 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,941,665
Number of Sequences: 28952
Number of extensions: 222734
Number of successful extensions: 532
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)