Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0223
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 30 0.37
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 29 0.85
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 29 0.85
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 28 1.1
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 27 2.6
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 27 2.6
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl... 27 2.6
SPAC4F10.05c |||mitochondrial lipoate-protein ligase |Schizosacc... 27 2.6
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo... 27 3.4
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 27 3.4
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 26 4.5
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch... 26 6.0
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac... 23 7.7
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 29.9 bits (64), Expect = 0.37
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 255 IGGWEDRFFQHFLQAEDREAGK 320
+GGW DR F+HF++ D AGK
Sbjct: 219 LGGWRDRKFKHFIEGGD--AGK 238
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 28.7 bits (61), Expect = 0.85
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 309 EAGKAPYPVLSSSDLEPTVVDEGPALGTYKTS 404
E PYP LSS+ L+P V GP++G+ S
Sbjct: 502 ERAACPYPFLSST-LQPLYVSLGPSIGSRNQS 532
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 28.7 bits (61), Expect = 0.85
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 653 DGFPSNKEVNPRARYPPTRRSGRSRN 576
D FPS+ ++PR R RR+ RSRN
Sbjct: 43 DSFPSSPVLSPRRRRMNRRRNERSRN 68
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 255 IGGWEDRFFQHFLQAEDREAGK 320
+GGW +R F+HF++ D AGK
Sbjct: 218 LGGWRERKFKHFIEGGD--AGK 237
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -1
Query: 242 WASWPIKGLGCRASQGQVKLP-PSRAFTRILGTSRALGPNRGTKKNGHFHRP 90
+AS P G + + P PSR+ G R RG +NG +H P
Sbjct: 129 YASSPYGGYSPSGASSARQTPAPSRSGASTAGRRRTSATTRGAIQNGVYHSP 180
>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = -2
Query: 169 HLPGFWELPGLWA--QTVVPRRMATSTG 92
++PGFW PG+W V P +ATS G
Sbjct: 337 YIPGFW--PGIWTIGNLVRPGYLATSDG 362
>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 278 LSTLSSSRRPGSWQSTVPRAVFVRS 352
+S+L S ++PGSW S + +AV V S
Sbjct: 15 ISSLLSLKKPGSWSSILLKAVGVLS 39
>SPAC4F10.05c |||mitochondrial lipoate-protein ligase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 219
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 255 IGGWEDRFFQHFLQAEDREAGKAPYPVLSSSDLEP 359
+G ++RF QH+L + + + P P + +S + P
Sbjct: 22 VGALQNRFVQHYLNYKANKVEQPPKPTIITSQVCP 56
>SPBC2A9.06c |||di-trans,
poly-cis-decaprenylcistransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 296 LKKVLKESVFPPPDVFVLWA 237
+ K LKESV P PD+ +++A
Sbjct: 191 IDKELKESVIPEPDLLIIFA 210
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/38 (31%), Positives = 15/38 (39%)
Frame = -3
Query: 600 PKEWKIKESPCKTRYTWSSELAGFLVPKPKSTDFPFPN 487
P E+ + P K Y + P PK T F F N
Sbjct: 197 PNEFDLISEPAKCPYCMTERFGVIYKPNPKLTPFSFNN 234
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 26.2 bits (55), Expect = 4.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2
Query: 541 ACGISCPKTQIYGFSLSQWC 482
ACG S + YG ++ +WC
Sbjct: 213 ACGNSSVRADFYGMNMYEWC 232
>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 370
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +3
Query: 513 WVLGQEIPQARLTKCTGSCKGIP*SSTPSGGRVP 614
W LG E LTKC G+ G+ S PS P
Sbjct: 218 WSLGFETYYGVLTKCAGASLGMRLHSGPSHPYAP 251
>SPAC821.12 |orb6||serine/threonine protein kinase
Orb6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 469
Score = 23.0 bits (47), Expect(2) = 7.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 406 VSSKNKLITWVRERCRANNYCPVG 477
+SSK+K+ TW + R R Y VG
Sbjct: 272 MSSKDKMATWKKNR-RVMAYSTVG 294
Score = 20.6 bits (41), Expect(2) = 7.7
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +1
Query: 253 TSGGGKTDSFNTFFKPKTGKLAK 321
++G K D ++ KP+TG K
Sbjct: 238 STGFYKQDQSASYMKPRTGNTVK 260
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,516,339
Number of Sequences: 5004
Number of extensions: 87696
Number of successful extensions: 271
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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