Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0223
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 34 0.094
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 32 0.50
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 31 0.67
11_01_0117 + 906419-906524,907531-907667,907948-908055,909649-90... 31 1.2
07_03_1117 - 24096425-24097853,24097894-24098336 30 1.5
08_02_0992 + 23380855-23381195,23382464-23382506,23383306-233833... 30 2.0
11_06_0611 + 25461469-25461655,25461670-25462238 29 2.7
09_04_0076 + 14350020-14350164,14351020-14351129,14351436-143516... 29 2.7
05_01_0008 + 60498-60552,60644-60864,60956-61013,61271-61443,615... 29 2.7
12_01_0800 - 7331444-7331539,7331617-7331742,7331830-7331907,733... 29 4.7
05_05_0202 - 23211342-23211385,23211493-23211579,23211666-232117... 29 4.7
11_03_0146 + 10744403-10744603,10745199-10745834,10745967-107461... 28 6.2
09_02_0386 - 8371631-8372125,8373696-8374139 28 6.2
05_06_0244 + 26643193-26643306,26643398-26643493,26643819-266438... 28 6.2
04_04_1245 - 32036929-32037042,32037152-32037208,32037299-320373... 28 6.2
04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198... 28 6.2
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880... 28 6.2
09_02_0390 + 8465652-8466059 28 8.2
06_03_0032 - 15697530-15697669,15699215-15699437,15699823-156999... 28 8.2
03_05_0424 + 24107009-24107138,24107381-24107784 28 8.2
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 8.2
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 34.3 bits (75), Expect = 0.094
Identities = 49/145 (33%), Positives = 62/145 (42%), Gaps = 2/145 (1%)
Frame = +1
Query: 250 KTSGGGKTDSFNTFF-KPKTGKLAKHRTPCCLRP-IXXXXXXMRVPHWAHTRQVVSSKNK 423
KT GGG D+FNTFF + GK L P + H Q++S K
Sbjct: 40 KTVGGGD-DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGDYRQLFHPEQLISGKED 98
Query: 424 LITWVRERCRANNYCPVGHYTIGKGKIRRFGFWDKKSRKLA*PSVPGLARGFLDLPLLRV 603
ANN+ GHYTIGK + + RKLA + GL +GF L V
Sbjct: 99 ---------AANNFAR-GHYTIGKEIV---DLCLDRIRKLA-DNCTGL-QGF--LVFNAV 141
Query: 604 GGYRALGFTSLLDGKPSLRLDYGQR 678
GG G SLL L +DYG++
Sbjct: 142 GGGTGSGLGSLL--LERLSVDYGKK 164
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 31.9 bits (69), Expect = 0.50
Identities = 21/50 (42%), Positives = 27/50 (54%)
Frame = +3
Query: 225 DGPRCPQDKDIGGWEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTVVDE 374
DG + P D+ +GG +D F F + AGK P DLEPTV+DE
Sbjct: 33 DG-QMPSDRTVGGGDDAFNTFF---SETGAGKH-VPRAVFVDLEPTVIDE 77
Score = 31.5 bits (68), Expect = 0.67
Identities = 47/145 (32%), Positives = 61/145 (42%), Gaps = 2/145 (1%)
Frame = +1
Query: 250 KTSGGGKTDSFNTFFKPK-TGKLAKHRTPCCLRP-IXXXXXXMRVPHWAHTRQVVSSKNK 423
+T GGG D+FNTFF GK L P + H Q+++ K
Sbjct: 40 RTVGGGD-DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGCYRQLFHPEQLINGKED 98
Query: 424 LITWVRERCRANNYCPVGHYTIGKGKIRRFGFWDKKSRKLA*PSVPGLARGFLDLPLLRV 603
ANN+ GHYTIGK + + RKLA + GL +GF L V
Sbjct: 99 A---------ANNFAR-GHYTIGKEIV---DLCLDRIRKLA-DNCTGL-QGF--LVFNAV 141
Query: 604 GGYRALGFTSLLDGKPSLRLDYGQR 678
GG G SLL L +DYG++
Sbjct: 142 GGGTGSGLGSLL--LERLSVDYGKK 164
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 31.5 bits (68), Expect = 0.67
Identities = 47/159 (29%), Positives = 66/159 (41%), Gaps = 2/159 (1%)
Frame = +1
Query: 208 RHPKPLMGQDAHKTKTSGGGKTDSFNTFF-KPKTGKLAKHRTPCCLRP-IXXXXXXMRVP 381
R+P P + T+ G D+FNTFF + +GK L P +
Sbjct: 85 RYPNPWSYLTLACSDTTPGIARDAFNTFFSETSSGKHVPRALFVDLEPTVIDEVKTGPYR 144
Query: 382 HWAHTRQVVSSKNKLITWVRERCRANNYCPVGHYTIGKGKIRRFGFWDKKSRKLA*PSVP 561
H Q++S K ANN+ GHYT+G+ + + RKLA +
Sbjct: 145 QLFHPEQLISYKED---------AANNFAR-GHYTVGREVV---DLCLDRLRKLA-DNCT 190
Query: 562 GLARGFLDLPLLRVGGYRALGFTSLLDGKPSLRLDYGQR 678
GL +GF L VGG G SLL L +DYG++
Sbjct: 191 GL-QGF--LVFNAVGGGTGSGLGSLL--LERLSVDYGRK 224
>11_01_0117 +
906419-906524,907531-907667,907948-908055,909649-909750,
909946-910033,910326-910560,910625-910715
Length = 288
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +3
Query: 165 KCPAWGKLYLPLGSTASQALDGPRCPQDKDIGGWEDRFFQHFLQAEDREAGKA 323
K ++GK Y G A D D+DI W D +H + DR A
Sbjct: 169 KSSSFGKKYSASGPPADTVHDNDHSHDDRDIDAWPDDEGEHVVAEADRSGHHA 221
>07_03_1117 - 24096425-24097853,24097894-24098336
Length = 623
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 297 AEDREAGKAPYPVLSSSDLEPTVV-----DEGPALGTYKTSCFIQEQTYYLGKGKM 449
A DR A +A PV+S DL+P + D P L T+ S F+ G+ K+
Sbjct: 69 ATDRAAFRAKVPVVSYDDLQPYIQRIANGDRSPILSTHPVSEFLTSSGTSAGERKL 124
>08_02_0992 +
23380855-23381195,23382464-23382506,23383306-23383371,
23384228-23384428,23384450-23384707,23384798-23385013,
23385148-23385321,23386151-23386312,23386594-23386635
Length = 500
Score = 29.9 bits (64), Expect = 2.0
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 4/102 (3%)
Frame = +3
Query: 189 YLPLGSTASQALDGPRCPQDKDIGGWEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTVV 368
Y PL +++ P C D W + F QH+ + +P ++ + T
Sbjct: 192 YGPLRCRMCRSILNPFCVVDYVAKIWRNHFPQHYSSISESNLPAELFPQYTTVEFMST-A 250
Query: 369 DEGPALGT----YKTSCFIQEQTYYLGKGKMPGQQLLPRGSL 482
+ GP + +C I+E+ YL +LLP SL
Sbjct: 251 ETGPVVPPVFLFVVDTCMIEEEIDYLKSALAQAIELLPDQSL 292
>11_06_0611 + 25461469-25461655,25461670-25462238
Length = 251
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -1
Query: 659 RRDGFPSNKEVNPRARYPPTRRSGRSRNPLARPGTLGQA 543
RR+G P+ V P R PP R R+ +PLA G+ G A
Sbjct: 157 RREGAPTIHAVAPPRRPPPPRLPSRA-SPLAPAGSDGMA 194
>09_04_0076 + 14350020-14350164,14351020-14351129,14351436-14351601,
14351740-14351840,14351960-14352032,14352111-14352252,
14353239-14353399,14354017-14354129,14354226-14354325,
14354580-14354676,14354798-14354849,14355074-14355175,
14355256-14355402,14355485-14355656,14355752-14355991,
14356565-14356621,14356853-14356942,14357089-14357284,
14358117-14358228,14358305-14358459,14359155-14360580,
14360663-14360857,14361214-14361684
Length = 1540
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = -3
Query: 621 QSPVPSHPK----EWKIKESPCKTRYTWSSELAGFLVPKPKSTDFPFPNGVVTHGAIVVG 454
+S VP P+ W+IK +P + ELAG ++P K+TD P+ H + +G
Sbjct: 919 ESMVPKGPEWAGGNWEIK-TPTNMKSIPQWELAGEVMPYMKTTDAGIPSVTADHIGVYLG 977
>05_01_0008 +
60498-60552,60644-60864,60956-61013,61271-61443,
61528-61711,61823-61993,62483-62514,62596-62638,
62768-62835,63561-63605,63695-64162
Length = 505
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/77 (25%), Positives = 35/77 (45%)
Frame = +3
Query: 147 SSQNPGKCPAWGKLYLPLGSTASQALDGPRCPQDKDIGGWEDRFFQHFLQAEDREAGKAP 326
S P + + + + GS + + DG CP+ +D G + H Q ++ GKAP
Sbjct: 347 SGSKPWEMQQYSQQRIGYGSNSQLSDDG--CPETQDNYGGGPSYSYHQNQNQN---GKAP 401
Query: 327 YPVLSSSDLEPTVVDEG 377
P + + + P+V G
Sbjct: 402 APDIQAEEARPSVYISG 418
>12_01_0800 -
7331444-7331539,7331617-7331742,7331830-7331907,
7332515-7332747,7332832-7332871,7333016-7333070,
7333158-7333345,7333416-7333475,7333686-7333769,
7334817-7334903,7335178-7335246,7335354-7335410
Length = 390
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 201 PRASKASPKQGIYPDSGNFPGFGPKP 124
P AS ++ +YPD NF G+ P P
Sbjct: 23 PPASSSTATPAVYPDWANFQGYPPIP 48
>05_05_0202 -
23211342-23211385,23211493-23211579,23211666-23211779,
23211886-23212111,23212222-23212401,23212511-23212654,
23212818-23212979,23213093-23213296,23214109-23214156,
23214601-23214846
Length = 484
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +1
Query: 121 PRFGPKAREVPRIRVNALLGGSFTC---PWEARHPKPLMGQDAHK 246
P GP+A E+ R R L F PW RHP+ +D HK
Sbjct: 54 PYDGPRAEEISRKRAEFLSPSLFHFYDRPWAYRHPRFGSYRDYHK 98
>11_03_0146 +
10744403-10744603,10745199-10745834,10745967-10746125,
10746398-10747036,10748018-10748151,10748281-10748464,
10748882-10749217,10751659-10751945,10752863-10753253,
10753351-10753615,10753740-10753818,10754123-10754543
Length = 1243
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +3
Query: 93 PVEVAILLGTTVWAQ--SPGSSQNPGKCPAWGKL-YLPLGSTASQALDGPRCPQDKDIGG 263
P++ A L V AQ +P +++ P A G + +P STA Q D PR + G
Sbjct: 485 PMDSAPLTSEEVSAQYSAPDTAEEPPAIEAGGVIGNVPGASTAIQTEDAPRAIDQESHGT 544
Query: 264 WEDRFFQ 284
RF Q
Sbjct: 545 EPKRFIQ 551
>09_02_0386 - 8371631-8372125,8373696-8374139
Length = 312
Score = 28.3 bits (60), Expect = 6.2
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +2
Query: 449 AGPTTIAPWVTTPLGKGKSVDLGFGTRNP-ASSLDQVYRVLQGDSLIFHSFGWEGTGLWG 625
A P I + T G+G S FG +NP SS+D+ +RV +G G E G
Sbjct: 213 AAPPPILFAIATLPGRGASSTSLFGFKNPLQSSIDKKWRVEKGG-------GEEEFGEGN 265
Query: 626 SLPYWMGSR 652
++ W G R
Sbjct: 266 AIEEWRGGR 274
>05_06_0244 +
26643193-26643306,26643398-26643493,26643819-26643884,
26643965-26644024,26644108-26644164,26644464-26644593,
26645114-26645181,26645276-26645368,26645473-26645520,
26645882-26646019,26646738-26646833,26647979-26648050,
26648928-26648982,26649078-26649112,26649808-26649963
Length = 427
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 656 RDGFPSNKEVNPRARYPPTRR-SGRSRNPLARPGTLGQASL 537
+ FPS +E PRA P R+ G SR A G +G A L
Sbjct: 11 KTAFPSVQEKKPRAPKEPQRKPDGVSREVYALTGGVGMAPL 51
>04_04_1245 -
32036929-32037042,32037152-32037208,32037299-32037375,
32037479-32037563,32037615-32037684,32038007-32038068,
32038249-32038336,32038685-32038815,32039182-32039213,
32039377-32039489,32039741-32040045,32040148-32040233,
32040350-32040425,32041002-32041097
Length = 463
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 416 LDETTCLVCAQCGTLINNSRFKIGRR 339
L++ C VC+ C I + F+IGRR
Sbjct: 84 LNKIDCAVCSYCFRFIGSIEFQIGRR 109
>04_04_0613 +
26617677-26617963,26618726-26618786,26619598-26619832,
26619958-26620196,26620493-26620744,26620844-26621024,
26621810-26621898,26622200-26622273,26622365-26622443
Length = 498
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 629 VNPRARYPPTRRSGRSRNP 573
++PRARYPP +GR NP
Sbjct: 1 MDPRARYPPGIGNGRGGNP 19
>02_05_0096 +
25785995-25786311,25786716-25786776,25787825-25788059,
25788292-25788530,25789700-25789951,25790043-25790223,
25790864-25790952,25791269-25791342,25791481-25791584,
25791919-25791957,25792324-25792436
Length = 567
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 629 VNPRARYPPTRRSGRSRNP 573
++PRARYPP +GR NP
Sbjct: 1 MDPRARYPPGIGNGRGGNP 19
>09_02_0390 + 8465652-8466059
Length = 135
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = +2
Query: 479 TTPLGKGKSVDLGFGTRNPASSLDQVYRVLQ 571
+TP G G +DLGFG SSL V R LQ
Sbjct: 65 STPPGAGLLLDLGFGGLISTSSLALVPRPLQ 95
>06_03_0032 -
15697530-15697669,15699215-15699437,15699823-15699929,
15700047-15700224,15700393-15700455,15700474-15700602,
15701211-15701430,15702162-15702262,15702954-15703062,
15705169-15705290,15705473-15705515,15705848-15705903,
15705983-15706089,15706167-15706342,15706507-15706618,
15706711-15706759,15707184-15707276,15707452-15707571,
15707686-15707787,15709442-15709540,15710103-15710237,
15710421-15710499,15710747-15710822,15710904-15710993,
15711139-15711217,15711304-15711338,15711457-15711531,
15712628-15713375
Length = 1221
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 552 WSSELAGFLVPKPKSTDFPFP 490
WS E A FL +P S PFP
Sbjct: 211 WSREAAAFLCSRPMSIALPFP 231
>03_05_0424 + 24107009-24107138,24107381-24107784
Length = 177
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 209 GIPSP*WAKMPTRQRHRGVGR-PILSTLSSSRRPGS 313
G P+ W PT+ RHR R P +T + S RP S
Sbjct: 112 GDPAEGWPTSPTQCRHRRPSRPPETTTATPSSRPAS 147
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -1
Query: 647 FPSNKEVNPRARYPPTRRSGRSRNPLARPGTLGQASLRDFLSQNPNLRIF 498
+P KE++ + +Y +R R+ + R Q + R +SQNP R+F
Sbjct: 414 YPPCKEIDVKLKYEKHKRKLRANGSVER-----QTTARKPMSQNPGRRVF 458
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,400,253
Number of Sequences: 37544
Number of extensions: 715282
Number of successful extensions: 2231
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2224
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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