Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0223
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_2003| Best HMM Match : Tubulin (HMM E-Value=0) 38 0.008
SB_19437| Best HMM Match : Tubulin (HMM E-Value=0) 38 0.010
SB_2674| Best HMM Match : Tubulin (HMM E-Value=0) 38 0.010
SB_48961| Best HMM Match : Tubulin (HMM E-Value=0) 37 0.018
SB_34400| Best HMM Match : Tubulin (HMM E-Value=0) 36 0.032
SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14) 33 0.22
SB_5512| Best HMM Match : Tubulin (HMM E-Value=0) 31 0.68
SB_12798| Best HMM Match : Ammonium_transp (HMM E-Value=0) 29 2.7
SB_9160| Best HMM Match : EGF (HMM E-Value=0.0019) 29 2.7
SB_21704| Best HMM Match : Ammonium_transp (HMM E-Value=0) 29 2.7
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_54685| Best HMM Match : RFX_DNA_binding (HMM E-Value=1.2e-08) 28 6.3
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056) 28 8.4
SB_20896| Best HMM Match : TSP_1 (HMM E-Value=4.8e-28) 28 8.4
SB_9168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 42.7 bits (96), Expect = 3e-04
Identities = 51/145 (35%), Positives = 64/145 (44%), Gaps = 2/145 (1%)
Frame = +1
Query: 250 KTSGGGKTDSFNTFF-KPKTGKLAKHRTPCCLRP-IXXXXXXMRVPHWAHTRQVVSSKNK 423
KT GGG DSFNTFF + +GK C L P + H Q+++ K
Sbjct: 40 KTIGGGD-DSFNTFFSETGSGKHVPRAVFCDLEPTVVDEVRTGTYRQLFHPEQLITGKED 98
Query: 424 LITWVRERCRANNYCPVGHYTIGKGKIRRFGFWDKKSRKLA*PSVPGLARGFLDLPLLRV 603
ANNY GHYT+GK I + RKLA GL +GFL
Sbjct: 99 ---------AANNYAR-GHYTVGKEMIDTV---LDRLRKLA-DGCTGL-QGFLIFH--SF 141
Query: 604 GGYRALGFTSLLDGKPSLRLDYGQR 678
GG GF+SLL L +DYG++
Sbjct: 142 GGGTGSGFSSLL--MERLSVDYGKK 164
Score = 35.5 bits (78), Expect = 0.042
Identities = 26/58 (44%), Positives = 30/58 (51%)
Frame = +3
Query: 225 DGPRCPQDKDIGGWEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYK 398
DG + P DK IGG +D F F +E P V DLEPTVVDE GTY+
Sbjct: 33 DG-QMPSDKTIGGGDDSFNTFF--SETGSGKHVPRAVF--CDLEPTVVDE-VRTGTYR 84
>SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 42.3 bits (95), Expect = 4e-04
Identities = 51/145 (35%), Positives = 63/145 (43%), Gaps = 2/145 (1%)
Frame = +1
Query: 250 KTSGGGKTDSFNTFF-KPKTGKLAKHRTPCCLRP-IXXXXXXMRVPHWAHTRQVVSSKNK 423
KT GGG DSFNTFF + GK C L P + H Q+++ K
Sbjct: 25 KTIGGGD-DSFNTFFSETGAGKHVPRAVFCDLEPTVVDEVRTGTYRQLFHPEQLITGKED 83
Query: 424 LITWVRERCRANNYCPVGHYTIGKGKIRRFGFWDKKSRKLA*PSVPGLARGFLDLPLLRV 603
ANNY GHYT+GK I + RKLA GL +GFL
Sbjct: 84 ---------AANNYAR-GHYTVGKQLIE---IVLDRLRKLA-DQCTGL-QGFLIFH--SF 126
Query: 604 GGYRALGFTSLLDGKPSLRLDYGQR 678
GG GF+SLL L +DYG++
Sbjct: 127 GGGTGSGFSSLL--MERLSVDYGKK 149
Score = 37.5 bits (83), Expect = 0.010
Identities = 49/145 (33%), Positives = 61/145 (42%), Gaps = 2/145 (1%)
Frame = +1
Query: 250 KTSGGGKTDSFNTFFKPK-TGKLAKHRTPCCLRP-IXXXXXXMRVPHWAHTRQVVSSKNK 423
KT GGG DSFNTFF GK L P + H Q+++ K
Sbjct: 458 KTIGGGD-DSFNTFFSETGAGKHVPRAVFVDLEPSVIDEIRTGTYRQLFHPEQLITGKED 516
Query: 424 LITWVRERCRANNYCPVGHYTIGKGKIRRFGFWDKKSRKLA*PSVPGLARGFLDLPLLRV 603
ANNY GHYT+GK I + RKLA GL +GF L
Sbjct: 517 A---------ANNYAR-GHYTVGKDHIDNV---LDRIRKLA-DQCSGL-QGF--LVFHSF 559
Query: 604 GGYRALGFTSLLDGKPSLRLDYGQR 678
GG GF++LL L +DYG++
Sbjct: 560 GGGTGSGFSALL--LERLSVDYGKK 582
Score = 36.3 bits (80), Expect = 0.024
Identities = 27/58 (46%), Positives = 31/58 (53%)
Frame = +3
Query: 225 DGPRCPQDKDIGGWEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYK 398
DG + P DK IGG +D F F + AGK P DLEPTVVDE GTY+
Sbjct: 18 DG-QMPSDKTIGGGDDSFNTFF---SETGAGK-HVPRAVFCDLEPTVVDE-VRTGTYR 69
Score = 33.5 bits (73), Expect = 0.17
Identities = 25/58 (43%), Positives = 31/58 (53%)
Frame = +3
Query: 225 DGPRCPQDKDIGGWEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYK 398
DG + P DK IGG +D F F + AGK P DLEP+V+DE GTY+
Sbjct: 451 DG-QMPSDKTIGGGDDSFNTFF---SETGAGK-HVPRAVFVDLEPSVIDE-IRTGTYR 502
>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1231
Score = 40.3 bits (90), Expect = 0.001
Identities = 51/145 (35%), Positives = 62/145 (42%), Gaps = 2/145 (1%)
Frame = +1
Query: 250 KTSGGGKTDSFNTFF-KPKTGKLAKHRTPCCLRP-IXXXXXXMRVPHWAHTRQVVSSKNK 423
KT GGG DSFNTFF + GK L P + H Q+++ K
Sbjct: 844 KTIGGGD-DSFNTFFSETGAGKHVPRAVFADLEPTVVDEVRTGTYRQLFHPEQLITGKED 902
Query: 424 LITWVRERCRANNYCPVGHYTIGKGKIRRFGFWDKKSRKLA*PSVPGLARGFLDLPLLRV 603
ANNY GHYT+GK I + RKLA GL +GFL
Sbjct: 903 ---------AANNYAR-GHYTVGKEMI---DLVLDRIRKLA-DQCTGL-QGFLIFH--SF 945
Query: 604 GGYRALGFTSLLDGKPSLRLDYGQR 678
GG GFTSLL L +DYG++
Sbjct: 946 GGGTGSGFTSLL--MERLSVDYGKK 968
Score = 39.5 bits (88), Expect = 0.003
Identities = 50/145 (34%), Positives = 63/145 (43%), Gaps = 2/145 (1%)
Frame = +1
Query: 250 KTSGGGKTDSFNTFF-KPKTGKLAKHRTPCCLRP-IXXXXXXMRVPHWAHTRQVVSSKNK 423
KT GGG D+FNTFF + GK L P + H Q+++ K
Sbjct: 411 KTIGGGD-DAFNTFFAETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKED 469
Query: 424 LITWVRERCRANNYCPVGHYTIGKGKIRRFGFWDKKSRKLA*PSVPGLARGFLDLPLLRV 603
ANNY GHYT+GK +I + RKLA GL +GFL
Sbjct: 470 A---------ANNYAR-GHYTVGKEQI---DIVLDRLRKLA-DGCTGL-QGFLIFH--SF 512
Query: 604 GGYRALGFTSLLDGKPSLRLDYGQR 678
GG GFTSLL L +DYG++
Sbjct: 513 GGGTGSGFTSLL--MERLSVDYGKK 535
Score = 37.1 bits (82), Expect = 0.014
Identities = 27/58 (46%), Positives = 32/58 (55%)
Frame = +3
Query: 225 DGPRCPQDKDIGGWEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYK 398
DG + P DK IGG +D F F + AGK P +DLEPTVVDE GTY+
Sbjct: 837 DG-QMPSDKTIGGGDDSFNTFF---SETGAGK-HVPRAVFADLEPTVVDE-VRTGTYR 888
Score = 35.5 bits (78), Expect = 0.042
Identities = 26/58 (44%), Positives = 31/58 (53%)
Frame = +3
Query: 225 DGPRCPQDKDIGGWEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYK 398
DG + P DK IGG +D F F + AGK P DLEPTV+DE GTY+
Sbjct: 404 DG-QMPSDKTIGGGDDAFNTFFAET---GAGK-HVPRAVFVDLEPTVIDE-VRTGTYR 455
>SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 38.7 bits (86), Expect = 0.004
Identities = 51/145 (35%), Positives = 62/145 (42%), Gaps = 2/145 (1%)
Frame = +1
Query: 250 KTSGGGKTDSFNTFF-KPKTGKLAKHRTPCCLRP-IXXXXXXMRVPHWAHTRQVVSSKNK 423
KT GGG DSFNTFF + GK L P + H Q++S K
Sbjct: 5 KTIGGGD-DSFNTFFAETGAGKHVPRAVFVDLEPTVIDEIRTGTYRQLFHPEQLLSGKED 63
Query: 424 LITWVRERCRANNYCPVGHYTIGKGKIRRFGFWDKKSRKLA*PSVPGLARGFLDLPLLRV 603
ANNY GHYT+GK I + RKLA GL +GFL
Sbjct: 64 ---------AANNYAR-GHYTVGKEHI---DLALDRIRKLA-DQCTGL-QGFLIFH--SF 106
Query: 604 GGYRALGFTSLLDGKPSLRLDYGQR 678
GG GF+SLL L +DYG++
Sbjct: 107 GGGTGSGFSSLL--MERLSVDYGKK 129
Score = 34.7 bits (76), Expect = 0.073
Identities = 24/53 (45%), Positives = 28/53 (52%)
Frame = +3
Query: 240 PQDKDIGGWEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYK 398
P DK IGG +D F F + AGK P DLEPTV+DE GTY+
Sbjct: 2 PSDKTIGGGDDSFNTFFAET---GAGK-HVPRAVFVDLEPTVIDE-IRTGTYR 49
>SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 451
Score = 37.9 bits (84), Expect = 0.008
Identities = 51/145 (35%), Positives = 60/145 (41%), Gaps = 2/145 (1%)
Frame = +1
Query: 250 KTSGGGKTDSFNTFFKPK-TGKLAKHRTPCCLRP-IXXXXXXMRVPHWAHTRQVVSSKNK 423
KT GGG DSFNTFF GK L P + H Q+++ K
Sbjct: 40 KTIGGGD-DSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED 98
Query: 424 LITWVRERCRANNYCPVGHYTIGKGKIRRFGFWDKKSRKLA*PSVPGLARGFLDLPLLRV 603
ANNY GHYTIGK I + RKLA GL +GFL
Sbjct: 99 A---------ANNYAR-GHYTIGKEII---DLVLDRCRKLA-DQCTGL-QGFLIFH--SF 141
Query: 604 GGYRALGFTSLLDGKPSLRLDYGQR 678
GG GF SLL L +DYG++
Sbjct: 142 GGGTGSGFASLL--MERLSVDYGKK 164
Score = 35.9 bits (79), Expect = 0.032
Identities = 27/58 (46%), Positives = 31/58 (53%)
Frame = +3
Query: 225 DGPRCPQDKDIGGWEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYK 398
DG + P DK IGG +D F F + AGK P DLEPTVVDE GTY+
Sbjct: 33 DG-QMPSDKTIGGGDDSFNTFF---SETGAGKH-VPRAVFVDLEPTVVDE-VRTGTYR 84
>SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 885
Score = 37.5 bits (83), Expect = 0.010
Identities = 50/145 (34%), Positives = 62/145 (42%), Gaps = 2/145 (1%)
Frame = +1
Query: 250 KTSGGGKTDSFNTFF-KPKTGKLAKHRTPCCLRP-IXXXXXXMRVPHWAHTRQVVSSKNK 423
KT GGG DSFNTFF + GK L P + H Q+V+ K
Sbjct: 40 KTIGGGD-DSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLVTGKED 98
Query: 424 LITWVRERCRANNYCPVGHYTIGKGKIRRFGFWDKKSRKLA*PSVPGLARGFLDLPLLRV 603
ANNY GHYT+GK + + RKLA GL +GFL
Sbjct: 99 ---------AANNYAR-GHYTVGKEIV---DLVLDRIRKLA-DQCTGL-QGFLIFH--SF 141
Query: 604 GGYRALGFTSLLDGKPSLRLDYGQR 678
GG GF+SLL L +DYG++
Sbjct: 142 GGGTGSGFSSLL--MERLSVDYGKK 164
Score = 35.9 bits (79), Expect = 0.032
Identities = 27/58 (46%), Positives = 31/58 (53%)
Frame = +3
Query: 225 DGPRCPQDKDIGGWEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYK 398
DG + P DK IGG +D F F + AGK P DLEPTVVDE GTY+
Sbjct: 33 DG-QMPSDKTIGGGDDSFNTFF---SETGAGK-HVPRAVFVDLEPTVVDE-VRTGTYR 84
Score = 35.9 bits (79), Expect = 0.032
Identities = 27/58 (46%), Positives = 31/58 (53%)
Frame = +3
Query: 225 DGPRCPQDKDIGGWEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYK 398
DG + P DK IGG +D F F + AGK P DLEPTVVDE GTY+
Sbjct: 466 DG-QMPSDKTIGGGDDSFNTFF---SETGAGKH-VPRAVFVDLEPTVVDE-VRTGTYR 517
>SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 1036
Score = 37.5 bits (83), Expect = 0.010
Identities = 50/145 (34%), Positives = 61/145 (42%), Gaps = 2/145 (1%)
Frame = +1
Query: 250 KTSGGGKTDSFNTFFKPK-TGKLAKHRTPCCLRP-IXXXXXXMRVPHWAHTRQVVSSKNK 423
KT GGG DSFNTFF GK L P + H Q+++ K
Sbjct: 104 KTIGGGD-DSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED 162
Query: 424 LITWVRERCRANNYCPVGHYTIGKGKIRRFGFWDKKSRKLA*PSVPGLARGFLDLPLLRV 603
ANNY GHYTIGK + + RKLA GL +GFL
Sbjct: 163 A---------ANNYAR-GHYTIGKEIV---DLVLDRIRKLA-DQCTGL-QGFLIFH--SF 205
Query: 604 GGYRALGFTSLLDGKPSLRLDYGQR 678
GG GF+SLL L +DYG++
Sbjct: 206 GGGTGSGFSSLL--MERLSVDYGKK 228
Score = 35.9 bits (79), Expect = 0.032
Identities = 27/58 (46%), Positives = 31/58 (53%)
Frame = +3
Query: 225 DGPRCPQDKDIGGWEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYK 398
DG + P DK IGG +D F F + AGK P DLEPTVVDE GTY+
Sbjct: 97 DG-QMPSDKTIGGGDDSFNTFF---SETGAGKH-VPRAVFVDLEPTVVDE-VRTGTYR 148
Score = 35.9 bits (79), Expect = 0.032
Identities = 27/58 (46%), Positives = 31/58 (53%)
Frame = +3
Query: 225 DGPRCPQDKDIGGWEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYK 398
DG + P DK IGG +D F F + AGK P DLEPTVVDE GTY+
Sbjct: 618 DG-QMPSDKTIGGGDDSFNTFF---SETGAGKH-VPRAVFVDLEPTVVDE-VRTGTYR 669
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/47 (44%), Positives = 24/47 (51%)
Frame = +3
Query: 225 DGPRCPQDKDIGGWEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTV 365
DG + P DK IGG +D F F + AGK P DLEPTV
Sbjct: 545 DG-QMPSDKTIGGGDDSFNTFF---SETGAGK-HVPRAVFVDLEPTV 586
>SB_48961| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 536
Score = 36.7 bits (81), Expect = 0.018
Identities = 52/143 (36%), Positives = 65/143 (45%)
Frame = +1
Query: 250 KTSGGGKTDSFNTFFKPKTGKLAKHRTPCCLRPIXXXXXXMRVPHWAHTRQVVSSKNKLI 429
KT GGG DSFNTFF +TG KH P R + V S +LI
Sbjct: 40 KTQGGGD-DSFNTFFS-ETGA-GKH-VP---RAVFVDL---------EPTVVALSPEQLI 83
Query: 430 TWVRERCRANNYCPVGHYTIGKGKIRRFGFWDKKSRKLA*PSVPGLARGFLDLPLLRVGG 609
T + ANNY GHYTIGK ++ + + RKLA GL F+ GG
Sbjct: 84 TGKEDA--ANNYAR-GHYTIGKQQVDQV---LDRLRKLA-DQCSGLQGFFI---FHSFGG 133
Query: 610 YRALGFTSLLDGKPSLRLDYGQR 678
GF+SLL L +DYG++
Sbjct: 134 GTGSGFSSLL--MERLSVDYGKK 154
>SB_34400| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 380
Score = 35.9 bits (79), Expect = 0.032
Identities = 27/58 (46%), Positives = 31/58 (53%)
Frame = +3
Query: 225 DGPRCPQDKDIGGWEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYK 398
DG + P DK IGG +D F F + AGK P DLEPTVVDE GTY+
Sbjct: 32 DG-QMPSDKTIGGGDDSFNTFF---SETGAGKH-VPRAVFVDLEPTVVDE-VRTGTYR 83
>SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14)
Length = 635
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = +3
Query: 108 ILLGTTVWAQSPGSSQNP--GKCPAWGKLYLPLGSTASQALDGPRCPQDKDIGGWE 269
+LL + WAQS S P K A G P T DGP C Q +G W+
Sbjct: 81 VLLCCSGWAQSGNSCPTPICSKGCAQGVCVKPDNCTCHPGYDGPSCDQACTLGRWD 136
>SB_5512| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 365
Score = 31.5 bits (68), Expect = 0.68
Identities = 31/75 (41%), Positives = 38/75 (50%)
Frame = +1
Query: 454 ANNYCPVGHYTIGKGKIRRFGFWDKKSRKLA*PSVPGLARGFLDLPLLRVGGYRALGFTS 633
ANNY GHYT+GK I + RKLA GL +GFL GG GF+S
Sbjct: 25 ANNYAR-GHYTVGKEHI---DLALDRIRKLA-DQCTGL-QGFLIFH--SFGGGTGSGFSS 76
Query: 634 LLDGKPSLRLDYGQR 678
LL L +DYG++
Sbjct: 77 LL--MERLSVDYGKK 89
>SB_12798| Best HMM Match : Ammonium_transp (HMM E-Value=0)
Length = 492
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = +3
Query: 228 GPRCPQDKDIGG---WEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYK 398
G R P ++ G WE F Q E+ A + P +S+ P+V+ PA+ T
Sbjct: 386 GLRMPLAMELDGADIWEHGIHLQFCQYEENNAEERESPAVSTRCHAPSVMQNNPAVSTRC 445
Query: 399 TSCFIQEQTYYLG 437
+ + + + G
Sbjct: 446 HAPSVMQNNFITG 458
>SB_9160| Best HMM Match : EGF (HMM E-Value=0.0019)
Length = 497
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 273 GLPTP-RCLCLVGILAHQGLGMPCFPRASKASPKQGIYPDSGNFP 142
GLPT +C+C G ++H + C AS Q ++ +FP
Sbjct: 136 GLPTEYKCICKKGFVSHSSDRLTCVSNGFTASDCQDLHSKFPSFP 180
>SB_21704| Best HMM Match : Ammonium_transp (HMM E-Value=0)
Length = 492
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = +3
Query: 228 GPRCPQDKDIGG---WEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYK 398
G R P ++ G WE F Q E+ A + P +S+ P+V+ PA+ T
Sbjct: 386 GLRMPLAMELDGADIWEHGIHLQFCQYEENNAEERESPAVSTRCHAPSVMQNNPAVSTRC 445
Query: 399 TSCFIQEQTYYLG 437
+ + + + G
Sbjct: 446 HAPSVMQNNFITG 458
>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 29.5 bits (63), Expect = 2.7
Identities = 29/75 (38%), Positives = 36/75 (48%)
Frame = +1
Query: 454 ANNYCPVGHYTIGKGKIRRFGFWDKKSRKLA*PSVPGLARGFLDLPLLRVGGYRALGFTS 633
ANNY GHYTIGK + K RK+ GL +GFL GG GF S
Sbjct: 1011 ANNYAR-GHYTIGKEMVE---VVMDKIRKMT-DQCSGL-QGFLIFH--SFGGGTGSGFAS 1062
Query: 634 LLDGKPSLRLDYGQR 678
L+ L +DYG++
Sbjct: 1063 LI--TEHLSVDYGKK 1075
>SB_54685| Best HMM Match : RFX_DNA_binding (HMM E-Value=1.2e-08)
Length = 510
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +1
Query: 448 CRANNYCPVGHYTIGKGKI---RRFGFWDKKSRKLA*PSVPGLARGFLDLP 591
C+ N P G T GKG+I +F K+R L P P + LDLP
Sbjct: 157 CKKNKLNPAGPATFGKGEIATKSKFSLGGSKTRTLL-PEFPNAQK--LDLP 204
>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2541
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -3
Query: 498 PFPNGVVTHGAIVVGPASFPYPSNKFVL 415
P P+G + G VGP SF Y NKF L
Sbjct: 1477 PVPHGFLEGGEKAVGPESF-YGDNKFAL 1503
>SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)
Length = 245
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 204 FPRASKASPKQGIYPDSGNFPGFGPKPWYQEEWPLPP 94
+P+ + P++G YP +G GP P W PP
Sbjct: 175 YPQGQEPYPEKGGYPPAGVGQHSGPYPGQPGMWGPPP 211
>SB_20896| Best HMM Match : TSP_1 (HMM E-Value=4.8e-28)
Length = 588
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 338 QHGVRCFASFPVFGLKKVLKESVFPPPDVFVL 243
Q G++ ++P+F V KE +FPP D+ L
Sbjct: 381 QCGMKSCGTWPIFPDDFVYKEFIFPPDDMICL 412
>SB_9168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 27.9 bits (59), Expect = 8.4
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = -3
Query: 615 PVPSHPKEWKIKESPCKTRYTWSSELAGFLVPKPKS--TDFPFPNGVVTHGA-IVVGPAS 445
P PS+ K C + +SS + LV K FP+P+ ++ +++
Sbjct: 136 PYPSNMLTLATKVLLCYVMFPYSSNMLA-LVTKVLLCYVMFPYPSNMLALATKVLLCYVM 194
Query: 444 FPYPSNKFVLG*NNLSC 394
FPYPSN L L C
Sbjct: 195 FPYPSNMLALATKVLLC 211
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,425,704
Number of Sequences: 59808
Number of extensions: 729556
Number of successful extensions: 2009
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1989
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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