Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0223
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 36 0.021
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 36 0.021
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 36 0.021
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 36 0.021
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 31 1.0
U49955-1|AAA93430.1| 481|Caenorhabditis elegans Hypothetical pr... 30 1.4
AL032630-3|CAA21560.1| 214|Caenorhabditis elegans Hypothetical ... 29 2.4
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 29 3.2
AF036689-3|AAB88322.2| 557|Caenorhabditis elegans Hypothetical ... 28 5.6
Z68106-7|CAA92131.1| 72|Caenorhabditis elegans Hypothetical pr... 28 7.4
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 28 7.4
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 28 7.4
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 28 7.4
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 7.4
AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical ... 28 7.4
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 27 9.8
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 36.3 bits (80), Expect = 0.021
Identities = 28/66 (42%), Positives = 35/66 (53%)
Frame = +3
Query: 225 DGPRCPQDKDIGGWEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYKTS 404
DG + P DK +GG +D F F +E P V+ DLEPTV+DE GTY+ S
Sbjct: 33 DG-QMPSDKSLGGSDDSFSTFF--SETGSGRHVPRAVMV--DLEPTVIDE-IRTGTYR-S 85
Query: 405 CFIQEQ 422
F EQ
Sbjct: 86 LFHPEQ 91
Score = 35.5 bits (78), Expect = 0.037
Identities = 47/140 (33%), Positives = 61/140 (43%), Gaps = 1/140 (0%)
Frame = +1
Query: 262 GGKTDSFNTFFKPK-TGKLAKHRTPCCLRPIXXXXXXMRVPHWAHTRQVVSSKNKLITWV 438
GG DSF+TFF +G+ L P T + + +LIT
Sbjct: 43 GGSDDSFSTFFSETGSGRHVPRAVMVDLEPTVIDEIR------TGTYRSLFHPEQLITGK 96
Query: 439 RERCRANNYCPVGHYTIGKGKIRRFGFWDKKSRKLA*PSVPGLARGFLDLPLLRVGGYRA 618
+ ANNY GHYTIGK I + R+LA + GL +GF L GG
Sbjct: 97 EDA--ANNYAR-GHYTIGKEII---DLTLDRIRRLA-DNCTGL-QGF--LVFHSFGGGTG 146
Query: 619 LGFTSLLDGKPSLRLDYGQR 678
GFTSLL L +DYG++
Sbjct: 147 SGFTSLL--MERLSVDYGKK 164
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 36.3 bits (80), Expect = 0.021
Identities = 28/66 (42%), Positives = 35/66 (53%)
Frame = +3
Query: 225 DGPRCPQDKDIGGWEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYKTS 404
DG + P DK +GG +D F F +E P V+ DLEPTV+DE GTY+ S
Sbjct: 32 DG-QMPSDKSLGGSDDSFSTFF--SETGSGRHVPRAVMV--DLEPTVIDE-IRTGTYR-S 84
Query: 405 CFIQEQ 422
F EQ
Sbjct: 85 LFHPEQ 90
Score = 35.5 bits (78), Expect = 0.037
Identities = 47/140 (33%), Positives = 61/140 (43%), Gaps = 1/140 (0%)
Frame = +1
Query: 262 GGKTDSFNTFFKPK-TGKLAKHRTPCCLRPIXXXXXXMRVPHWAHTRQVVSSKNKLITWV 438
GG DSF+TFF +G+ L P T + + +LIT
Sbjct: 42 GGSDDSFSTFFSETGSGRHVPRAVMVDLEPTVIDEIR------TGTYRSLFHPEQLITGK 95
Query: 439 RERCRANNYCPVGHYTIGKGKIRRFGFWDKKSRKLA*PSVPGLARGFLDLPLLRVGGYRA 618
+ ANNY GHYTIGK I + R+LA + GL +GF L GG
Sbjct: 96 EDA--ANNYAR-GHYTIGKEII---DLTLDRIRRLA-DNCTGL-QGF--LVFHSFGGGTG 145
Query: 619 LGFTSLLDGKPSLRLDYGQR 678
GFTSLL L +DYG++
Sbjct: 146 SGFTSLL--MERLSVDYGKK 163
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 36.3 bits (80), Expect = 0.021
Identities = 28/66 (42%), Positives = 35/66 (53%)
Frame = +3
Query: 225 DGPRCPQDKDIGGWEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYKTS 404
DG + P DK +GG +D F F +E P V+ DLEPTV+DE GTY+ S
Sbjct: 33 DG-QMPSDKSLGGSDDSFSTFF--SETGSGRHVPRAVMV--DLEPTVIDE-IRTGTYR-S 85
Query: 405 CFIQEQ 422
F EQ
Sbjct: 86 LFHPEQ 91
Score = 35.5 bits (78), Expect = 0.037
Identities = 47/140 (33%), Positives = 61/140 (43%), Gaps = 1/140 (0%)
Frame = +1
Query: 262 GGKTDSFNTFFKPK-TGKLAKHRTPCCLRPIXXXXXXMRVPHWAHTRQVVSSKNKLITWV 438
GG DSF+TFF +G+ L P T + + +LIT
Sbjct: 43 GGSDDSFSTFFSETGSGRHVPRAVMVDLEPTVIDEIR------TGTYRSLFHPEQLITGK 96
Query: 439 RERCRANNYCPVGHYTIGKGKIRRFGFWDKKSRKLA*PSVPGLARGFLDLPLLRVGGYRA 618
+ ANNY GHYTIGK I + R+LA + GL +GF L GG
Sbjct: 97 EDA--ANNYAR-GHYTIGKEII---DLTLDRIRRLA-DNCTGL-QGF--LVFHSFGGGTG 146
Query: 619 LGFTSLLDGKPSLRLDYGQR 678
GFTSLL L +DYG++
Sbjct: 147 SGFTSLL--MERLSVDYGKK 164
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 36.3 bits (80), Expect = 0.021
Identities = 28/66 (42%), Positives = 35/66 (53%)
Frame = +3
Query: 225 DGPRCPQDKDIGGWEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYKTS 404
DG + P DK +GG +D F F +E P V+ DLEPTV+DE GTY+ S
Sbjct: 33 DG-QMPSDKSLGGSDDSFSTFF--SETGSGRHVPRAVMV--DLEPTVIDE-IRTGTYR-S 85
Query: 405 CFIQEQ 422
F EQ
Sbjct: 86 LFHPEQ 91
Score = 35.5 bits (78), Expect = 0.037
Identities = 47/140 (33%), Positives = 61/140 (43%), Gaps = 1/140 (0%)
Frame = +1
Query: 262 GGKTDSFNTFFKPK-TGKLAKHRTPCCLRPIXXXXXXMRVPHWAHTRQVVSSKNKLITWV 438
GG DSF+TFF +G+ L P T + + +LIT
Sbjct: 43 GGSDDSFSTFFSETGSGRHVPRAVMVDLEPTVIDEIR------TGTYRSLFHPEQLITGK 96
Query: 439 RERCRANNYCPVGHYTIGKGKIRRFGFWDKKSRKLA*PSVPGLARGFLDLPLLRVGGYRA 618
+ ANNY GHYTIGK I + R+LA + GL +GF L GG
Sbjct: 97 EDA--ANNYAR-GHYTIGKEII---DLTLDRIRRLA-DNCTGL-QGF--LVFHSFGGGTG 146
Query: 619 LGFTSLLDGKPSLRLDYGQR 678
GFTSLL L +DYG++
Sbjct: 147 SGFTSLL--MERLSVDYGKK 164
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 30.7 bits (66), Expect = 1.0
Identities = 45/140 (32%), Positives = 59/140 (42%), Gaps = 1/140 (0%)
Frame = +1
Query: 262 GGKTDSFNTFF-KPKTGKLAKHRTPCCLRPIXXXXXXMRVPHWAHTRQVVSSKNKLITWV 438
G DSFNTFF + GK L P T + + +L+T
Sbjct: 48 GVDDDSFNTFFSETMAGKHVPRAIMVDLEPTPIDEIR------TGTYKTLFHPEQLLTGK 101
Query: 439 RERCRANNYCPVGHYTIGKGKIRRFGFWDKKSRKLA*PSVPGLARGFLDLPLLRVGGYRA 618
+ ANNY GHYTIGK I D+ R + + GL +GF L GG
Sbjct: 102 EDA--ANNYAR-GHYTIGKEIID--VVMDRVRRLV--ENCRGL-QGF--LVFHSFGGGTG 151
Query: 619 LGFTSLLDGKPSLRLDYGQR 678
GFT+LL L +DYG++
Sbjct: 152 SGFTALL--MERLSVDYGKK 169
>U49955-1|AAA93430.1| 481|Caenorhabditis elegans Hypothetical
protein C27D9.1 protein.
Length = 481
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/42 (45%), Positives = 20/42 (47%)
Frame = +1
Query: 88 NGRWKWPFFLVPRFGPKAREVPRIRVNALLGGSFTCPWEARH 213
N R W F VPRF V RIRV LL FT P + H
Sbjct: 119 NDRRTW-FSQVPRFFEFLNSVARIRVRDLLFSGFTSPDQRIH 159
>AL032630-3|CAA21560.1| 214|Caenorhabditis elegans Hypothetical
protein Y62H9A.3 protein.
Length = 214
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 204 FPRASKASPKQGIYPDSGNFPGFG-PKPWYQEEWPLPPA 91
+PR +K P + PD G P P P + WPLPPA
Sbjct: 34 YPRPTK-KPTYSV-PDLGPLPPASYPVPNFPNSWPLPPA 70
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -1
Query: 659 RRDGFPSNKEVNPRARYPPTRRSGRSRNP 573
RR P ++V+ R+R PP RR RSR+P
Sbjct: 129 RRSRSPPRRQVS-RSRSPPPRRQQRSRSP 156
>AF036689-3|AAB88322.2| 557|Caenorhabditis elegans Hypothetical
protein C50A2.2 protein.
Length = 557
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 380 GTLINNSRFKIGRRQHGVRCFASFPVFGLKKVLKESVFP 264
GT+++ + KI +H R A PVF L K FP
Sbjct: 515 GTVLDVNELKIKITEHSSRFVAILPVFNLNSDWKNCFFP 553
>Z68106-7|CAA92131.1| 72|Caenorhabditis elegans Hypothetical
protein F41E7.8 protein.
Length = 72
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = -3
Query: 153 GNFPGFGPKPWYQEEW-PLPPAI 88
G + G+GP+PW W P P I
Sbjct: 35 GGYGGYGPRPWGPRPWGPRPTVI 57
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 58 PLEKKLQKSKNGRWKWPFFLVPRFG 132
P ++KL K+K G W +P LV +FG
Sbjct: 6757 PEDQKLSKNKKGEWVYP--LVDKFG 6779
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 58 PLEKKLQKSKNGRWKWPFFLVPRFG 132
P ++KL K+K G W +P LV +FG
Sbjct: 7476 PEDQKLSKNKKGEWVYP--LVDKFG 7498
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 58 PLEKKLQKSKNGRWKWPFFLVPRFG 132
P ++KL K+K G W +P LV +FG
Sbjct: 10013 PEDQKLSKNKKGEWVYP--LVDKFG 10035
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Frame = +3
Query: 285 HFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYKTSCFIQEQTYYLGK---GKM-- 449
+ L D A K S S + P +G LGT + +I E +GK GK
Sbjct: 10369 YVLVPSDESAAKVLPTDESGSVVYPITKPDGTPLGTDSSGSYITEDGQLVGKDEEGKPVG 10428
Query: 450 PGQQLLPRGSLHHW 491
P Q+LP S H+
Sbjct: 10429 PDGQVLPTDSAGHY 10442
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 58 PLEKKLQKSKNGRWKWPFFLVPRFG 132
P ++KL K+K G W +P LV +FG
Sbjct: 6802 PEDQKLSKNKKGEWVYP--LVDKFG 6824
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 58 PLEKKLQKSKNGRWKWPFFLVPRFG 132
P ++KL K+K G W +P LV +FG
Sbjct: 7521 PEDQKLSKNKKGEWVYP--LVDKFG 7543
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 58 PLEKKLQKSKNGRWKWPFFLVPRFG 132
P ++KL K+K G W +P LV +FG
Sbjct: 10058 PEDQKLSKNKKGEWVYP--LVDKFG 10080
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Frame = +3
Query: 285 HFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYKTSCFIQEQTYYLGK---GKM-- 449
+ L D A K S S + P +G LGT + +I E +GK GK
Sbjct: 10414 YVLVPSDESAAKVLPTDESGSVVYPITKPDGTPLGTDSSGSYITEDGQLVGKDEEGKPVG 10473
Query: 450 PGQQLLPRGSLHHW 491
P Q+LP S H+
Sbjct: 10474 PDGQVLPTDSAGHY 10487
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 58 PLEKKLQKSKNGRWKWPFFLVPRFG 132
P ++KL K+K G W +P LV +FG
Sbjct: 6802 PEDQKLSKNKKGEWVYP--LVDKFG 6824
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 58 PLEKKLQKSKNGRWKWPFFLVPRFG 132
P ++KL K+K G W +P LV +FG
Sbjct: 7521 PEDQKLSKNKKGEWVYP--LVDKFG 7543
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 58 PLEKKLQKSKNGRWKWPFFLVPRFG 132
P ++KL K+K G W +P LV +FG
Sbjct: 10058 PEDQKLSKNKKGEWVYP--LVDKFG 10080
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Frame = +3
Query: 285 HFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYKTSCFIQEQTYYLGK---GKM-- 449
+ L D A K S S + P +G LGT + +I E +GK GK
Sbjct: 10414 YVLVPSDESAAKVLPTDESGSVVYPITKPDGTPLGTDSSGSYITEDGQLVGKDEEGKPVG 10473
Query: 450 PGQQLLPRGSLHHW 491
P Q+LP S H+
Sbjct: 10474 PDGQVLPTDSAGHY 10487
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 222 GLGMPCFPRASKASPKQGIYPDSGNFPGFGPKPWYQE 112
G GMP + S +G +P G PG GP +Y +
Sbjct: 1513 GRGMPS--PMMRGSSMRGGFPQRGGGPGMGPSQYYHD 1547
>AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical
protein F54A3.1 protein.
Length = 425
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2
Query: 239 PTRQRHRGVGRPILSTLSSSRRPGSWQSTVPR 334
P R R + P S+ S +RRPGS S+VPR
Sbjct: 366 PGAPRSR-IAMPTTSSSSLARRPGSASSSVPR 396
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
on autosome protein2 protein.
Length = 1758
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = -3
Query: 672 PVVQTERR-LPIQ*GSEPQSPVPSHPKEWKIKES-PCKTRYTWSSELAGFLVPKPKS 508
P++Q + P+Q + PQSP+ + K + P TW++E A + PKP+S
Sbjct: 777 PMLQASQAPQPLQ--APPQSPMETTATVTYTKTTVPPSVANTWNTEKAQLISPKPRS 831
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,860,843
Number of Sequences: 27780
Number of extensions: 531649
Number of successful extensions: 1731
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1726
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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