Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0223
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.52 
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   2.1  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   2.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.8  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 132 AQSPGSSQNPGKCPAWGKLYLPLGSTASQAL-DGPR 236
           A+SP S     +CP    L     ST +++L +GPR
Sbjct: 680 ARSPSSQAQASQCPQTASLLSSTHSTLARSLMEGPR 715


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 528 LVPKPKSTDFPFPNGVVTHGAIVVGPASFPY 436
           ++P PK T F    G+      V G  S+P+
Sbjct: 203 MLPDPKKTPFLISWGIAQVVTTVAGIVSYPF 233


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 528 LVPKPKSTDFPFPNGVVTHGAIVVGPASFPY 436
           ++P PK T F    G+      V G  S+P+
Sbjct: 203 MLPDPKKTPFLISWGIAQVVTTVAGIVSYPF 233


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 198 RASKASPKQGIYPDSG 151
           R+S+ +PK+G+Y + G
Sbjct: 5   RSSEINPKEGLYDEGG 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,585
Number of Sequences: 438
Number of extensions: 7216
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)