Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0223
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 35 0.045
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 35 0.045
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 35 0.060
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 35 0.060
At5g45170.1 68418.m05545 CbbY protein-related low similarity to ... 32 0.42
At1g19230.1 68414.m02393 respiratory burst oxidase protein E (Rb... 30 1.3
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 29 3.0
At4g26100.3 68417.m03758 casein kinase, putative similar to case... 29 3.9
At4g26100.1 68417.m03757 casein kinase, putative similar to case... 29 3.9
At2g26960.1 68415.m03234 myb family transcription factor (MYB81)... 29 3.9
At1g09070.1 68414.m01012 C2 domain-containing protein / src2-lik... 29 3.9
At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK... 28 6.8
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ... 28 6.8
At1g17550.1 68414.m02161 protein phosphatase 2C-related / PP2C-r... 28 6.8
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 28 6.8
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 28 6.8
At1g08480.1 68414.m00939 expressed protein 28 6.8
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 27 9.0
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 27 9.0
At5g15980.1 68418.m01868 pentatricopeptide (PPR) repeat-containi... 27 9.0
At4g40100.1 68417.m05676 ABA-responsive protein-related low simi... 27 9.0
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 27 9.0
At3g44460.1 68416.m04779 basic leucine zipper transcription fact... 27 9.0
At2g46480.1 68415.m05785 glycosyl transferase family 8 protein c... 27 9.0
At2g18800.1 68415.m02188 xyloglucan:xyloglucosyl transferase, pu... 27 9.0
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 35.1 bits (77), Expect = 0.045
Identities = 25/58 (43%), Positives = 31/58 (53%)
Frame = +3
Query: 225 DGPRCPQDKDIGGWEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYK 398
DG + P DK +GG +D F F + AGK P DLEPTV+DE GTY+
Sbjct: 33 DG-QMPSDKTVGGGDDAFNTFF---SETGAGK-HVPRAVFVDLEPTVIDE-VRTGTYR 84
Score = 34.7 bits (76), Expect = 0.060
Identities = 49/145 (33%), Positives = 62/145 (42%), Gaps = 2/145 (1%)
Frame = +1
Query: 250 KTSGGGKTDSFNTFF-KPKTGKLAKHRTPCCLRP-IXXXXXXMRVPHWAHTRQVVSSKNK 423
KT GGG D+FNTFF + GK L P + H Q++S K
Sbjct: 40 KTVGGGD-DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED 98
Query: 424 LITWVRERCRANNYCPVGHYTIGKGKIRRFGFWDKKSRKLA*PSVPGLARGFLDLPLLRV 603
ANN+ GHYTIGK + + RKLA + GL +GF L V
Sbjct: 99 ---------AANNFAR-GHYTIGKEIV---DLCLDRIRKLA-DNCTGL-QGF--LVFNAV 141
Query: 604 GGYRALGFTSLLDGKPSLRLDYGQR 678
GG G SLL L +DYG++
Sbjct: 142 GGGTGSGLGSLL--LERLSVDYGKK 164
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 35.1 bits (77), Expect = 0.045
Identities = 25/58 (43%), Positives = 31/58 (53%)
Frame = +3
Query: 225 DGPRCPQDKDIGGWEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYK 398
DG + P DK +GG +D F F + AGK P DLEPTV+DE GTY+
Sbjct: 33 DG-QMPSDKTVGGGDDAFNTFF---SETGAGK-HVPRAVFVDLEPTVIDE-VRTGTYR 84
Score = 34.7 bits (76), Expect = 0.060
Identities = 49/145 (33%), Positives = 62/145 (42%), Gaps = 2/145 (1%)
Frame = +1
Query: 250 KTSGGGKTDSFNTFF-KPKTGKLAKHRTPCCLRP-IXXXXXXMRVPHWAHTRQVVSSKNK 423
KT GGG D+FNTFF + GK L P + H Q++S K
Sbjct: 40 KTVGGGD-DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED 98
Query: 424 LITWVRERCRANNYCPVGHYTIGKGKIRRFGFWDKKSRKLA*PSVPGLARGFLDLPLLRV 603
ANN+ GHYTIGK + + RKLA + GL +GF L V
Sbjct: 99 ---------AANNFAR-GHYTIGKEIV---DLCLDRIRKLA-DNCTGL-QGF--LVFNAV 141
Query: 604 GGYRALGFTSLLDGKPSLRLDYGQR 678
GG G SLL L +DYG++
Sbjct: 142 GGGTGSGLGSLL--LERLSVDYGKK 164
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 34.7 bits (76), Expect = 0.060
Identities = 49/145 (33%), Positives = 62/145 (42%), Gaps = 2/145 (1%)
Frame = +1
Query: 250 KTSGGGKTDSFNTFF-KPKTGKLAKHRTPCCLRP-IXXXXXXMRVPHWAHTRQVVSSKNK 423
KT GGG D+FNTFF + GK L P + H Q++S K
Sbjct: 40 KTVGGGD-DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED 98
Query: 424 LITWVRERCRANNYCPVGHYTIGKGKIRRFGFWDKKSRKLA*PSVPGLARGFLDLPLLRV 603
ANN+ GHYTIGK + + RKLA + GL +GF L V
Sbjct: 99 ---------AANNFAR-GHYTIGKEIV---DLCLDRIRKLA-DNCTGL-QGF--LVFNAV 141
Query: 604 GGYRALGFTSLLDGKPSLRLDYGQR 678
GG G SLL L +DYG++
Sbjct: 142 GGGTGSGLGSLL--LERLSVDYGKK 164
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 34.7 bits (76), Expect = 0.060
Identities = 49/145 (33%), Positives = 62/145 (42%), Gaps = 2/145 (1%)
Frame = +1
Query: 250 KTSGGGKTDSFNTFF-KPKTGKLAKHRTPCCLRP-IXXXXXXMRVPHWAHTRQVVSSKNK 423
KT GGG D+FNTFF + GK L P + H Q++S K
Sbjct: 40 KTVGGGD-DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED 98
Query: 424 LITWVRERCRANNYCPVGHYTIGKGKIRRFGFWDKKSRKLA*PSVPGLARGFLDLPLLRV 603
ANN+ GHYTIGK + + RKLA + GL +GF L V
Sbjct: 99 ---------AANNFAR-GHYTIGKEIV---DLCLDRIRKLA-DNCTGL-QGF--LVFNAV 141
Query: 604 GGYRALGFTSLLDGKPSLRLDYGQR 678
GG G SLL L +DYG++
Sbjct: 142 GGGTGSGLGSLL--LERLSVDYGKK 164
>At5g45170.1 68418.m05545 CbbY protein-related low similarity to
SP|P40119 CbbY protein, chromosomal {Alcaligenes
eutrophus}
Length = 372
Score = 31.9 bits (69), Expect = 0.42
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = -3
Query: 297 LEESVERIGLPTPRCLCLVG----ILAHQGLGMPCFPRASKASPKQGIYPDS-GNFPGFG 133
L + E IGLP C+ + G + A + +GMPC S + + G +P + G GFG
Sbjct: 299 LRAAAEHIGLPVNNCVLVAGSQPGVSAAKMIGMPCVVMRSSLTAR-GEFPSAKGVMDGFG 357
>At1g19230.1 68414.m02393 respiratory burst oxidase protein E
(RbohE) / NADPH oxidase nearly identical to respiratory
burst oxidase protein E GI:3242787 [gi:3242787] from
[Arabidopsis thaliana]
Length = 926
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -3
Query: 255 CLCLVGILAHQGLGMPC-FPRASKASPKQ 172
C +GIL H G + C FPR +SP+Q
Sbjct: 453 CAIAIGILVHAGTHLACDFPRIINSSPEQ 481
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/53 (37%), Positives = 24/53 (45%)
Frame = +3
Query: 240 PQDKDIGGWEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYK 398
P D +G D F F +E P V DLEPTV+DE GTY+
Sbjct: 37 PSDSTVGACHDAFNTFF--SETSSGQHVPRAVFL--DLEPTVIDE-VRTGTYR 84
>At4g26100.3 68417.m03758 casein kinase, putative similar to casein
kinase I, delta isoform [Arabidopsis thaliana]
SWISS-PROT:P42158; contains protein kinase domain,
Pfam:PF00069
Length = 450
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 200 QGQVKLPPSRAFTRILGTSRALGP 129
Q Q+ PPSRA +GTS AL P
Sbjct: 297 QSQLTAPPSRALNPAVGTSAALPP 320
>At4g26100.1 68417.m03757 casein kinase, putative similar to casein
kinase I, delta isoform [Arabidopsis thaliana]
SWISS-PROT:P42158; contains protein kinase domain,
Pfam:PF00069
Length = 450
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 200 QGQVKLPPSRAFTRILGTSRALGP 129
Q Q+ PPSRA +GTS AL P
Sbjct: 297 QSQLTAPPSRALNPAVGTSAALPP 320
>At2g26960.1 68415.m03234 myb family transcription factor (MYB81)
contains PFAM profile: myb DNA binding domain PF00249;
identical to cDNA putative transcription factor (MYB81)
mRNA, partial cds GI:3941513
Length = 427
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/68 (30%), Positives = 28/68 (41%)
Frame = +3
Query: 135 QSPGSSQNPGKCPAWGKLYLPLGSTASQALDGPRCPQDKDIGGWEDRFFQHFLQAEDREA 314
QSP ++Q P CP+ LY L + G + D D E FQ F A +
Sbjct: 321 QSPLTAQTPSDCPS-SSLYDGLLESVVYGSSGEKPATDTDS---ESSLFQSFTPANENIT 376
Query: 315 GKAPYPVL 338
GK + L
Sbjct: 377 GKTCFLTL 384
>At1g09070.1 68414.m01012 C2 domain-containing protein / src2-like
protein, putative similar to cold-regulated gene SRC2
[Glycine max] GI:2055230; contains Pfam profile PF00168:
C2 domain; identical to cDNA src2-like protein
GI:3426059
Length = 324
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 204 FPRASKASPKQGIYPDSGNFPGFGPK 127
+P + P G YP G +PG+ P+
Sbjct: 208 YPAGTGGYPPPGAYPQQGGYPGYPPQ 233
>At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK,
putative similar to cyclin dependent kinase C
[Lycopersicon esculentum] gi|15215944|emb|CAC51391
Length = 513
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Frame = -3
Query: 216 GMPCFPRASKASPKQGIY-----PDSGNFPGFGPKPWYQE 112
G P P ++ IY PD N+PG PWY +
Sbjct: 237 GKPILPGKTENEQLNKIYELCGSPDESNWPGVSKMPWYNQ 276
>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 989
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -1
Query: 458 LARHLSLTQVISLFLDETTCLVCAQCGTLINNSRFKIGRRQHGVRC 321
+ RH+ + ++L +ET CA C N R++ G + ++C
Sbjct: 765 MKRHVLHNERLTLVTNETKLFQCAPCDRWSNGFRYQHGYKSLDLQC 810
>At1g17550.1 68414.m02161 protein phosphatase 2C-related /
PP2C-related similar to protein phosphatase 2C
GI:3242077 from (Arabidopsis thaliana)
Length = 511
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 264 WEDRFFQHFLQAEDREAGKAPYPVLSSSD 350
WE F +L+ +D GK PV+ SSD
Sbjct: 285 WEKVFVDCYLKVDDEVKGKINRPVVGSSD 313
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = -1
Query: 662 KRRDGFPSNKEVNP--RARYPPTRRS--GRSRNPLARPGTLGQASLRDFLSQNP 513
+RR P + P R R PP R RSR+P+ RPG +S+ + P
Sbjct: 297 RRRSPLPLRRRSPPPRRLRSPPRRSPIRRRSRSPIRRPGRSRSSSISPRKGRGP 350
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = -1
Query: 662 KRRDGFPSNKEVNP--RARYPPTRRS--GRSRNPLARPGTLGQASLRDFLSQNP 513
+RR P + P R R PP R RSR+P+ RPG +S+ + P
Sbjct: 304 RRRSPLPLRRRSPPPRRLRSPPRRSPIRRRSRSPIRRPGRSRSSSISPRKGRGP 357
>At1g08480.1 68414.m00939 expressed protein
Length = 142
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Frame = +3
Query: 264 WEDR--FFQHFLQAEDREAGKAPYPVLSSSDLEPTVVDE---GPALGT 392
W DR FF+++ + R+A P P SSSD+E + + GP L T
Sbjct: 19 WSDRLSFFENYTRFTKRDA---PLPSWSSSDVEEFIASDPVHGPTLKT 63
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 27.5 bits (58), Expect = 9.0
Identities = 21/53 (39%), Positives = 25/53 (47%)
Frame = +3
Query: 240 PQDKDIGGWEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYK 398
P D +G D F F + AGK P DLEPTV+DE GTY+
Sbjct: 37 PSDTTVGVAHDAFNTFF---SETGAGKH-VPRAVFVDLEPTVIDE-VRTGTYR 84
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 27.5 bits (58), Expect = 9.0
Identities = 21/53 (39%), Positives = 25/53 (47%)
Frame = +3
Query: 240 PQDKDIGGWEDRFFQHFLQAEDREAGKAPYPVLSSSDLEPTVVDEGPALGTYK 398
P D +G D F F + AGK P DLEPTV+DE GTY+
Sbjct: 37 PSDTTVGVAHDAFNTFF---SETGAGKH-VPRAVFVDLEPTVIDE-VRTGTYR 84
>At5g15980.1 68418.m01868 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 668
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -3
Query: 267 PTPRCLCLV--GILAHQGLGMPCFPRASKASPKQG 169
PTP C CL+ I+ + L M F RA K K G
Sbjct: 358 PTPHCFCLLLKKIVTAKILDMDLFSRAVKVYTKNG 392
>At4g40100.1 68417.m05676 ABA-responsive protein-related low
similarity to ABA-responsive protein [Hordeum vulgare]
GI:4103635; contains Pfam profile PF02893: GRAM domain
Length = 225
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +2
Query: 449 AGPTTIAPWVTTPLGKGKSVDLGFGTRNPASSLDQVYRVLQGDSLIFHSFGWEG 610
AGP +V PL + KSV+ T NPA QV V + +EG
Sbjct: 154 AGPVMGVLYVVIPLHQLKSVNPSISTVNPAEKYIQVISVDDHEFWFMGFLNYEG 207
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 27.5 bits (58), Expect = 9.0
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Frame = -1
Query: 662 KRRDGFPSNK---EVNPRARY--PPTRRS----GRSRNPLARPGTLGQASLRD-FLSQNP 513
+ RD +PSN+ E +PR R+ PP RRS R R +R + LRD SQ+P
Sbjct: 451 RNRDRYPSNRSYSERSPRGRFRSPPRRRSPPRYNRRRRSTSRSPDGYRRRLRDGSRSQSP 510
Query: 512 NLR 504
R
Sbjct: 511 RHR 513
>At3g44460.1 68416.m04779 basic leucine zipper transcription factor
(BZIP67) identical to basic leucine zipper transcription
factor GI:18656053 from [Arabidopsis thaliana];
identical to cDNA basic leucine zipper transcription
factor (atbzip67 gene) GI:18656052
Length = 331
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -1
Query: 614 RYPPTRRSGR-SRNPLARPGTLGQASLRDFL 525
++PP+ SG+ S + R TLG+ +L DFL
Sbjct: 123 QHPPSSNSGQNSAENIRRQQTLGEITLEDFL 153
>At2g46480.1 68415.m05785 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8;
Length = 528
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 412 SKNKLITWVRERCRANNYCPVGHYTIGKGKIRR 510
S KL T R R+ + P+G+YTI K + RR
Sbjct: 57 SLQKLETAAMARSRSVDSAPLGNYTIWKNEYRR 89
>At2g18800.1 68415.m02188 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase TCH4 GI:886116 from
[Arabidopsis thaliana]
Length = 305
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 385 WAHTRQVVSSKNKLITWVRERCRANNYC 468
W R + SS K++ WV+ + NYC
Sbjct: 255 WFSQRGMDSSSKKVLRWVQRKFMVYNYC 282
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,409,625
Number of Sequences: 28952
Number of extensions: 519200
Number of successful extensions: 1548
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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