Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0222
         (684 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       27   0.19 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.8  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    23   1.8  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.1  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.1  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.1  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   7.1  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   9.4  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +3

Query: 477 HRVRYGHPPHLKIREE---YPDRIMNTYSVVPSPKV 575
           H  RYGH P++ + EE    PD I++ +     PK+
Sbjct: 305 HLRRYGHTPNVVLDEEGNPCPDIIIDVHGTRRGPKI 340


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 92   NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEA 214
            N+I  + W +  D  G     AYHGD  +  E I    ++A
Sbjct: 911  NRIRNQRWIVNRDTSGATGPFAYHGDQWVGFEDIKSVRDKA 951


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 435 LPTGLPTYTFPRWRHRVRYGHPP-HLKIREEY 527
           L TGL T   P+W++R +   P  H  I +E+
Sbjct: 111 LGTGLLTSAGPKWQNRRKILTPAFHFNILQEF 142


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/47 (19%), Positives = 24/47 (51%)
 Frame = +3

Query: 531 DRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDKPTALTTRLY 671
           + ++  Y+V+  P  +++        L++ Q+++  +K   LTT  +
Sbjct: 9   NNLLGPYNVLERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAW 55


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/47 (19%), Positives = 24/47 (51%)
 Frame = +3

Query: 531 DRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDKPTALTTRLY 671
           + ++  Y+V+  P  +++        L++ Q+++  +K   LTT  +
Sbjct: 9   NNLLGPYNVLERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAW 55


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/47 (19%), Positives = 24/47 (51%)
 Frame = +3

Query: 531 DRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDKPTALTTRLY 671
           + ++  Y+V+  P  +++        L++ Q+++  +K   LTT  +
Sbjct: 9   NNLLGPYNVLERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAW 55


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 528 PDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDKPTALTTRLYTT 677
           P  +++T +  PSP +S+   E   A  +   ++ +T  P   +T   TT
Sbjct: 124 PSGVISTNTSPPSPILSNRFGENEEAD-AASNVISSTPLPPTTSTTTRTT 172


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +3

Query: 561 PSPKVSDTVVEPYNATLSVHQLVENTDKPTALTT 662
           P+P  S  V EP ++T S          P  +TT
Sbjct: 92  PAPLASPLVQEPGSSTTSATSGAVMASPPMPITT 125


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,003
Number of Sequences: 336
Number of extensions: 3729
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)