Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0222
(684 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 24 1.6
AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein... 24 1.6
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 23 3.6
AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 prot... 23 3.6
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 23 3.6
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 4.7
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 22 6.3
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 8.3
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 8.3
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 21 8.3
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 23.8 bits (49), Expect = 1.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 167 DSDLQLERINVYYNEASGGKYVPRAILVDWSPAPWTLSAP 286
D+ L+ I Y N+ GG++V I W+P + + P
Sbjct: 72 DARLKFSNIAPYLNQIYGGQFVRDLI---WTPTVYVSNEP 108
>AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein
protein.
Length = 411
Score = 23.8 bits (49), Expect = 1.6
Identities = 7/20 (35%), Positives = 15/20 (75%)
Frame = +1
Query: 388 VDSVLDVVRKESESCDCLQG 447
+DS+++++R ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 22.6 bits (46), Expect = 3.6
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = +3
Query: 531 DRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDKPTALTTRLY 671
D +++ Y+ + P +++T L + QL+E K +TT ++
Sbjct: 39 DDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVW 85
>AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139
protein.
Length = 232
Score = 22.6 bits (46), Expect = 3.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 633 FQLAGELRESHCM 595
F G +RESHCM
Sbjct: 68 FGCCGAIRESHCM 80
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 22.6 bits (46), Expect = 3.6
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = +2
Query: 410 SAKNQNLAIAYRASNLHIPSVAAPGPVWAPSSSKDP*RVPRQNHEHILSSPLAQSIRH 583
++ + +L+ A S H P V + P S P Q H H SSP Q H
Sbjct: 284 ASHHSHLSSALGRSACHSPGVYPSTAGFLPPSYHPHQHHPSQYHPHRGSSPHHQHGNH 341
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 22.2 bits (45), Expect = 4.7
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +3
Query: 531 DRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDKPTALTTRLY 671
D +++ Y+ + P V+ T L + QL++ K +TT L+
Sbjct: 30 DDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW 76
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 21.8 bits (44), Expect = 6.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 191 CAPTASQSPHGRHRWGRCRARQ 126
C+P Q+P R GR R R+
Sbjct: 392 CSPPPRQTPPSRKESGRRRRRR 413
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 8.3
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 531 DRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDKPTALTTRLY 671
D +++ Y+ + P V+ + V L + QL++ K +TT L+
Sbjct: 34 DDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLW 80
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 8.3
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 531 DRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDKPTALTTRLY 671
D +++ Y+ + P V+ + V L + QL++ K +TT L+
Sbjct: 34 DDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLW 80
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +3
Query: 609 LSVHQLVENTDKPTALTTRLYTT 677
LS+H +++ +K LTT + T
Sbjct: 37 LSLHHIIDVDEKNQILTTNCWVT 59
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,934
Number of Sequences: 438
Number of extensions: 4476
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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