Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0221
(569 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 35 0.010
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 32 0.068
SPAC27D7.05c |apc14|omt1|anaphase-promoting complex subunit Apc1... 30 0.27
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 29 0.63
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 29 0.63
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 29 0.63
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 0.84
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 28 0.84
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 28 0.84
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 27 1.9
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 2.6
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 2.6
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 2.6
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 26 3.4
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 26 4.5
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|... 26 4.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 4.5
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc... 25 5.9
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 25 5.9
SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase Gmh3|Schizo... 25 5.9
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 25 5.9
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 25 7.8
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 25 7.8
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 34.7 bits (76), Expect = 0.010
Identities = 19/85 (22%), Positives = 41/85 (48%)
Frame = -2
Query: 517 DVCVMKNAGLSGKEMPAKAKLEKEIDEIRSKLSKNDSEFPNEKNRFQTEIAKLKDVNAKL 338
D M+ A +S + K + KE +I+ + + ++ E+ + + EI +L+ +
Sbjct: 114 DSLKMQKASVSSM-VNRKQRAAKEEQKIQEEFERQITDLLEEQQQLKLEIERLEAETERA 172
Query: 337 EGDKDVFANKYKALENETSNLSNQC 263
+ + + + +ALE E L N+C
Sbjct: 173 NSETEQYEKQKEALEEEYEELRNEC 197
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 31.9 bits (69), Expect = 0.068
Identities = 20/81 (24%), Positives = 40/81 (49%)
Frame = -1
Query: 248 EMKNREAQINKLSADLKNATSLQTAMSDCMKKIEDLKKEIDSKGKDIE*LKNQVGNVYKN 69
++++ ++ ++KL D + ++ +S +K + DLK E K+IE K V N Y+N
Sbjct: 557 DVESSQSSLDKLRNDAEENRNI---LSSKLKVLSDLKGEKKDVSKNIERKKETVHNTYRN 613
Query: 68 RPRIRISCSKRLADKSKNKKK 6
R + A S ++ +
Sbjct: 614 LMSNRTKLEEMKASLSSSRSR 634
>SPAC27D7.05c |apc14|omt1|anaphase-promoting complex subunit
Apc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 29.9 bits (64), Expect = 0.27
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +3
Query: 327 LSPSNLALTSFSFAISVWNLFFSFGNSESFFDSLERISSISFSNLAFAGISLPDNPAFFI 506
L+ L L S AI WN G E+ + ER S I+ S +A + S+P+ +
Sbjct: 32 LAKKPLLLPEASKAIEFWNYRDVIGGEEAEQERNERASRIAISRIASSRSSIPEYRQAIM 91
Query: 507 TH 512
H
Sbjct: 92 QH 93
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 28.7 bits (61), Expect = 0.63
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = -2
Query: 451 KEIDEIRSKLSKNDSEFPNEKNR---FQTEIAKLKDVNAKLEGDKDVFANKYKALENETS 281
KEI E+++++ KND +EKN + ++KD N L + +FA+ + LE +
Sbjct: 144 KEIAELKTQIEKNDQAL-SEKNHEVMVSNQALQMKDTN--LTNLEKLFADSREQLETKCK 200
Query: 280 NLS 272
L+
Sbjct: 201 ELA 203
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 457 LEKEIDEIRSKLSKNDSEFPNEKNRFQTEIAKLKDVNAK 341
+EK+++E + K E NEK Q +I +L D K
Sbjct: 106 VEKQLEEQSTSYQKEIEEVRNEKEATQVKIHELLDAKWK 144
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 28.7 bits (61), Expect = 0.63
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 312 LANTSLSPSNLALTSFSFAISVWNLFFSFGNS 407
L NTSLSP + +L+ ++S W F+F N+
Sbjct: 76 LTNTSLSPHSFSLSDMESSMSNWLNPFAFDNT 107
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 28.7 bits (61), Expect = 0.63
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 460 KLEKEIDEIRSKLSKNDSEFPNEKNRFQTEIAKLK 356
KL +E+DE + K+ + EF N N+FQ + L+
Sbjct: 218 KLLRELDEEKEKVYAEEQEFYNNLNQFQIKKLSLE 252
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 28.3 bits (60), Expect = 0.84
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -1
Query: 203 LKNATSLQTAMSDCMKKIEDLKKEIDSKGKDIE*LKNQVGNVYKNR 66
L+ T + DC++KIE+L+K+ID +D+ +G +N+
Sbjct: 1266 LQELTRWRDTFYDCIQKIEELEKQID-VARDVAEDTKSLGKELQNK 1310
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 28.3 bits (60), Expect = 0.84
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = -2
Query: 508 VMKNAGLSGKEMPAKAKLEKEIDEIRSKLSKNDSEFPNEKNRFQTEIAKLKDVNAKLEGD 329
V K G K + AKL K++D K KN + + ++ ++ K KD + D
Sbjct: 12 VKKKDGSMNKRVKV-AKLPKKVDSFSPKKKKNTTSSGSSESDSMSQNDKKKDSSLNESED 70
Query: 328 KDVFANKYKALENE 287
+D A EN+
Sbjct: 71 EDFAGFGESASEND 84
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 28.3 bits (60), Expect = 0.84
Identities = 21/79 (26%), Positives = 41/79 (51%)
Frame = -1
Query: 251 EEMKNREAQINKLSADLKNATSLQTAMSDCMKKIEDLKKEIDSKGKDIE*LKNQVGNVYK 72
+++ R+ +I+ L + N + Q A++ K+++ + DIE LKN+V V
Sbjct: 948 KKLTARQEEISNLKEE--NMSQSQ-AITSVKSKLDETLSKSSKLEADIEHLKNKVSEVEV 1004
Query: 71 NRPRIRISCSKRLADKSKN 15
R + ++ ++RL D KN
Sbjct: 1005 ERNAL-LASNERLMDDLKN 1022
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 27.1 bits (57), Expect = 1.9
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = -2
Query: 505 MKNAGLSGKEMPAKAKLEKEIDEIRSKLSK-----NDSEFPNEKNRFQTEIAKLKDVNAK 341
+K A L +E L K I+++ S LSK +EF ++ + L NA+
Sbjct: 391 LKAAKLPSEEENTTKWLNKAINDLVSSLSKINFSTEGTEFDKKQIEMIQNLPPLFVFNAR 450
Query: 340 LEGDKDVFANKYKALENE 287
DK+V + K+ EN+
Sbjct: 451 SVIDKEVVPEQEKSAENQ 468
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 424 LSKNDSEFPNEKNRFQTEIAKLKDVNAKLEGDKDVFANKYK 302
L K + E KN+ Q+ + LKD LE + ++F + K
Sbjct: 178 LRKREREILQNKNQGQSTLNSLKDRQQALEKEVNIFKEREK 218
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 26.6 bits (56), Expect = 2.6
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -2
Query: 550 NG*RFGM*NRGDVCVMKNAGLSGKE-MPAKAKLEKEIDEIRSKLSKNDSEFP 398
NG R+G + D C+ K L+ E + K L+K+ ++ LS +DS P
Sbjct: 618 NGIRYGKSHNEDTCIKKRRNLNYNENLSCKVDLDKK--KMLETLSLSDSPNP 667
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.6 bits (56), Expect = 2.6
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = -1
Query: 248 EMKNREAQINKLSADLKNATSLQTAMSDCMKKIEDLKKEIDSKGKDIE*LKNQVGNVYKN 69
E N + Q+ +L A KN L+ + +C+ I+ L KE+++K + + L + Y
Sbjct: 1096 ESLNDKDQLYQLQAT-KNK-ELEAKVKECLNNIKSLTKELENKEEKCQNL-SDASLKYIE 1152
Query: 68 RPRIRISCSKRLADKSKNKKK 6
I + +++D KKK
Sbjct: 1153 LQEIHENLLLKVSDLENYKKK 1173
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -1
Query: 245 MKNREAQINKLSADLKNATSLQTAMSDCMKKIEDLKKEIDSKGK 114
++NRE+ + DL + ++ A +++ DLK++I S+ K
Sbjct: 23 LRNRESTSVLYTIDLDMESDVEDAFFHLDRELHDLKQQISSQSK 66
Score = 25.8 bits (54), Expect = 4.5
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 375 VWNLFFSFGNSESFFDSLERISSISFSNLAFAGISLPDNPAFFITHTSPLFHIPNL 542
V NL GN FF++LE I+ S + A + + N ++TH L ++ NL
Sbjct: 403 VHNLLRKLGNVGDFFEALELDQYIALSKKSLA-LEMTVN-EIYLTHEIILENLDNL 456
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 25.8 bits (54), Expect = 4.5
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -2
Query: 484 GKEMPAKAKLEKEIDEIRSKLSKNDSEFPNEKNRFQTEIAKLKDVNAKLEGDKD 323
G E+ K K+E+E DEI +S+ NE+N+ +T + + +A E D
Sbjct: 199 GTEINLKQKIEEENDEILE--DSKESKDENEENK-ETSTTNVAETDAPEEETVD 249
>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 162
Score = 25.8 bits (54), Expect = 4.5
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = -2
Query: 502 KNAGLSGKEMPAKAKLEKEIDEIRSKLSKNDSEFPNE 392
K + ++ KE+ K KL KE++ IRS L K SE P++
Sbjct: 103 KQSSINDKEL--KIKL-KEVESIRSDLLKCMSEHPDK 136
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 486 DNPAFFITHTSPLFHIPNLQPF 551
DNP + +T PL I +L+PF
Sbjct: 1685 DNPICLLDNTQPLHWISSLEPF 1706
>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
Pho4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 5.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 477 SLPDNPAFFITHTSPLFHIPN 539
S P+NP +F+ H +P+ N
Sbjct: 106 SYPENPLYFVKHWTPVIKAEN 126
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 227 QINKLSADLKNATSLQTAMSDCMKKIEDLKKEIDSKG 117
+I K ++L +LQT +S K + DLK ++++G
Sbjct: 340 EIAKGKSNLAYLRTLQTVVSSLRKLVADLKTILENRG 376
>SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase
Gmh3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 25.4 bits (53), Expect = 5.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 369 ISVWNLFFSFGNSESFFDSLERISSI 446
IS + ++F FGNS S +LER+ +
Sbjct: 20 ISSFLIYFQFGNSFSASPALERLQDV 45
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 25.4 bits (53), Expect = 5.9
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Frame = -2
Query: 466 KAKLEKEID--EIRSKLSKNDSEFPNEKNRFQTEIAKLKDVNAKL-------EGDKDVFA 314
KA EK ++ E+ KL + D E ++ + T++ +L++ NA L E
Sbjct: 993 KAINEKNLNIRELNEKLMRLDDELLLKQRSYDTKVQELREENASLKDQCRTYESQLASLV 1052
Query: 313 NKYKALENE 287
+KY E+E
Sbjct: 1053 SKYSETESE 1061
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 25.0 bits (52), Expect = 7.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 378 WNLFFSFGNSESFFDSLERISSISFSNLAFAGI 476
WNL S NS + + SSISF L G+
Sbjct: 227 WNLDMSKSNSLNLDSIIVDTSSISFEELHITGV 259
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 25.0 bits (52), Expect = 7.8
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 227 QINKLSADLKNATSLQTAMSDCMKKIEDLKKEIDSKGKDIE 105
Q +K +KN Q A + +K++DL +E S D++
Sbjct: 201 QGSKAKDKIKNDPDAQKAKEETKQKLQDLYEEFKSVAVDLQ 241
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,828,893
Number of Sequences: 5004
Number of extensions: 29000
Number of successful extensions: 179
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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