Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0220
         (607 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    24   1.1  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    24   1.1  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    24   1.1  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    24   1.1  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    24   1.1  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           24   1.1  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    24   1.1  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   1.5  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         22   4.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.1  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   6.1  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   6.1  

>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -2

Query: 600 PTT*FVVMTTASRADIPSGSAYTYWAGTDTSRPKRGTRGEPP 475
           P T       +S A   S ++ T  AGT+ +  K G    PP
Sbjct: 157 PATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPP 198


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -2

Query: 600 PTT*FVVMTTASRADIPSGSAYTYWAGTDTSRPKRGTRGEPP 475
           P T       +S A   S ++ T  AGT+ +  K G    PP
Sbjct: 157 PATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPP 198


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -2

Query: 600 PTT*FVVMTTASRADIPSGSAYTYWAGTDTSRPKRGTRGEPP 475
           P T       +S A   S ++ T  AGT+ +  K G    PP
Sbjct: 157 PATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPP 198


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -2

Query: 600 PTT*FVVMTTASRADIPSGSAYTYWAGTDTSRPKRGTRGEPP 475
           P T       +S A   S ++ T  AGT+ +  K G    PP
Sbjct: 157 PATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPP 198


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -2

Query: 600 PTT*FVVMTTASRADIPSGSAYTYWAGTDTSRPKRGTRGEPP 475
           P T       +S A   S ++ T  AGT+ +  K G    PP
Sbjct: 113 PATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPP 154


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -2

Query: 600 PTT*FVVMTTASRADIPSGSAYTYWAGTDTSRPKRGTRGEPP 475
           P T       +S A   S ++ T  AGT+ +  K G    PP
Sbjct: 157 PATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPP 198


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -2

Query: 600 PTT*FVVMTTASRADIPSGSAYTYWAGTDTSRPKRGTRGEPP 475
           P T       +S A   S ++ T  AGT+ +  K G    PP
Sbjct: 157 PATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPP 198


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 230 RSTYRLRGFKTVKILKKPEPTVGEGEVLIRVKACGLNF 343
           RST+ ++ FK +K+L      +    + I ++  GLN+
Sbjct: 12  RSTHSMKNFKYLKVLVTFAHFICLFPITINIRKNGLNY 49


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 384 RRLLSSWASNALVKSSKVGENVTNFKVGDQV 476
           RR+L+S   N   KS+  G  V  +  GD +
Sbjct: 131 RRILASAGINKTFKSTLTGTPVDGWLFGDNL 161


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 228  AVVLTGFGGSRPLRYSKNLSRPLVRAR 308
            ++ L G+  S+  +YS+ ++ P  RAR
Sbjct: 1472 SLALGGWNDSQGDKYSRLVNNPAARAR 1498


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = -2

Query: 600 PTT*FVVMTTASRADIPSGSAYTYWAGTDTSRPKRGTRGEPP 475
           P T       +S A   S ++ T  AGT+ +  K      PP
Sbjct: 157 PATSTTSQNLSSPASSTSSTSSTEKAGTNNNNSKSSQSSNPP 198


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -1

Query: 451 VTFSPTLLDFTSALEAQDERSLRWRVDGALTNYQILEV*AAGFHAN 314
           V  S   + F+S    +  RSL     GALT + ++     G H N
Sbjct: 346 VQVSNKKIKFSSFGMLKISRSLLTSFGGALTTFLVILFQYGGIHGN 391


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,973
Number of Sequences: 336
Number of extensions: 2830
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)