Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0220
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    39   5e-04
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    29   0.70 
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    27   1.6  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   4.9  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    25   6.5  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   6.5  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.6  

>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +2

Query: 245 LRGFKTVKILKKPEPT-VGEGEVLIRVKACGLNFQDLIVR*GAIDSPPKTPFILGF*CAG 421
           + GF  +K  +   P  +  GEVL+++KA  LN++DLI+  G    P + P + G   AG
Sbjct: 11  ISGFDQLKPEEYEVPQKLNPGEVLVKLKAASLNYRDLIITKGLYPLPLQLPVVPGSDGAG 70

Query: 422 EIEQ 433
            IE+
Sbjct: 71  IIEK 74


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 426 SSKVGENVTNFKVGDQVVALPEYRAWADWCL 518
           S K+   ++NF+ GD    +P ++ W  +CL
Sbjct: 341 SKKLITMLSNFREGDSAKNIPTHKLWCTYCL 371


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 435 VGENV-TNFKVGDQVVALPEYRAWADWCLYRPSTCTRCPKECLPWMLLS 578
           VG+ V  +FKVGD+VV L  + A+A +    P+T      E +P  + S
Sbjct: 72  VGDKVEADFKVGDRVVYLTPFGAYAQYTNV-PTTLVSKVSEKIPLKIAS 119


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
 Frame = +3

Query: 456 FKVGDQVVALPEYRAWADWCLYRPSTCTR---CPKECLPWMLL 575
           F  GD++VA+      A W +     CT    CP  C P  L+
Sbjct: 75  FPYGDKMVAVTPDEGNAGWAMSPDQYCTAGTWCPYACEPGYLM 117


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
 Frame = +2

Query: 215 QGNARRSTYRLRGFKTVKI--LKKPEPTVGEGEVLIRVKACGLNFQDLIVR*GAIDSPPK 388
           Q N  R  Y ++  +  KI  +K+ E T  E  +L RV+        + +  G       
Sbjct: 219 QSNHNRLYYAIKVLEKKKIVDMKQIEHTCDERYILSRVQ-----HPFITILWGTFQDAKN 273

Query: 389 TPFILGF*CAGEIEQSWRKCHQF 457
              ++ F   GE+    RKCH+F
Sbjct: 274 LFMVMDFAEGGELFSLLRKCHRF 296


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 405 ASNALVKSSKVGENVTNFKVGDQV 476
           A++ L KSSK   NV+N  +GDQ+
Sbjct: 109 ANHQLTKSSKSLSNVSNKPLGDQL 132


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 357  FVRAPSTLHRRLLSSWAS--NALVKSSKVGENVTNFKVGDQVVALPEYRA 500
            ++  P+ LHRR++ S  S  N + K ++V  +V     GD++V +   RA
Sbjct: 1211 YLGIPTNLHRRIIGSGGSIINKIRKIAQVKIDVPR-TPGDEIVVVQGSRA 1259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,824
Number of Sequences: 5004
Number of extensions: 44809
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)