Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0220
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1140 + 34386042-34386302,34386738-34386917,34386999-343870...    42   5e-04
04_03_0559 + 17118319-17118396,17119329-17119467,17119569-171196...    39   0.004
04_03_0562 + 17190443-17190520,17190715-17190853,17190943-171910...    38   0.008
04_03_0566 + 17209455-17209565,17210159-17210203,17211456-172115...    35   0.043
09_04_0636 + 19150966-19151037,19151150-19151291,19151404-191514...    35   0.057
08_01_0065 + 452383-452629,452733-452868,453049-453118,453237-45...    34   0.10 
01_06_0737 + 31592562-31592786,31593314-31593541,31593981-315940...    31   0.71 
10_08_0795 + 20635038-20635501,20636034-20636335,20636409-20637010     29   2.9  
03_01_0012 - 101584-101898,102274-102531,102932-103474                 29   2.9  
11_06_0506 - 24380469-24380632,24381737-24383893,24384488-243845...    29   3.8  
10_08_0923 + 21597593-21597629,21598089-21598135,21598253-215983...    28   5.0  
08_01_0901 - 8873905-8874076,8874674-8874786,8875388-8875522,887...    28   5.0  
12_02_0197 + 15392427-15392617,15392743-15393271                       27   8.7  
09_04_0641 + 19172370-19172459,19172539-19172680,19172951-191730...    27   8.7  
06_02_0214 + 13141213-13143741                                         27   8.7  
05_03_0489 - 14662378-14664957                                         27   8.7  
04_03_0036 - 9950353-9950379,9950753-9950791,9951021-9951194,995...    27   8.7  
01_01_0774 - 6004040-6004371,6004634-6005215,6005391-6005657,600...    27   8.7  

>02_05_1140 +
           34386042-34386302,34386738-34386917,34386999-34387080,
           34387180-34387287,34387442-34387630,34387814-34388010
          Length = 338

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
 Frame = +2

Query: 287 PTVGEGEVLIRVKACGLNFQDLIVR*GAIDSPPKTPFILGF*CAGEIEQSWRKC-HQFXX 463
           P  GEGEVL+ V A G+N  D + R G   +PP      G  C+G I         ++  
Sbjct: 25  PPPGEGEVLVGVSAAGVNRADTVQRQGRYPAPPGASPYPGLECSGTILALGPNVPSRWAV 84

Query: 464 XXXXXXXXXXXXXXXXVSVPAQYVYALPEGMSALDA 571
                           V VPA  +  +PEG+S  DA
Sbjct: 85  GDQVCALLSSGGYAEKVVVPAGQLLPVPEGVSLTDA 120


>04_03_0559 +
           17118319-17118396,17119329-17119467,17119569-17119660,
           17119974-17120660
          Length = 331

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
 Frame = +2

Query: 251 GFKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVR*GAI-DSPPKTPFILGF*CAGEI 427
           G  T+K ++ P P++ + E+LI+++A  LN  D  ++ G +    PK PFI     +GE+
Sbjct: 21  GAATLKFVEIPVPSLKKNEILIKIEAASLNQADWRIQKGLMRPFHPKFPFIPVTDVSGEV 80

Query: 428 EQSWRKCHQF 457
            +     H+F
Sbjct: 81  IEVGSAIHEF 90


>04_03_0562 +
           17190443-17190520,17190715-17190853,17190943-17191034,
           17191681-17191989,17192817-17193506
          Length = 435

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = +2

Query: 251 GFKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVR*GAI-DSPPKTPFILGF*CAGEI 427
           G   +K ++ P P+V + EVL++V+A  +N  DL+ + G +    PK PFI     +GEI
Sbjct: 21  GAAALKFVEIPVPSVKKDEVLVKVEAASINQSDLMTQKGMMRPFHPKFPFIPVNNVSGEI 80

Query: 428 EQSWRKCHQF 457
            +      +F
Sbjct: 81  VEVGSAVREF 90


>04_03_0566 +
           17209455-17209565,17210159-17210203,17211456-17211569,
           17211943-17212081,17212324-17212415,17213245-17213517
          Length = 257

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = +2

Query: 251 GFKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVR*GAI-DSPPKTPFILGF*CAGEI 427
           G   +K ++ P P+V + EVLI+V+A  +N  D  ++ G +    PK PFI     AGEI
Sbjct: 85  GAGALKHVEIPVPSVKKHEVLIKVEAASVNPIDWSIQKGMLRPFLPKFPFIPVTDVAGEI 144

Query: 428 EQSWRKCHQ 454
            ++    H+
Sbjct: 145 VEAGSAVHE 153


>09_04_0636 +
           19150966-19151037,19151150-19151291,19151404-19151492,
           19151589-19152308
          Length = 340

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +2

Query: 251 GFKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVR*GAID--SPPKTPFILGF*CAGE 424
           G + +K ++ P PT  +GEVLI+++A  +N  D   + G      P K PFI  +  AGE
Sbjct: 19  GAQALKHVEVPIPTPKKGEVLIKMEAGSINQVDWKFQKGVARPFMPNKFPFIPVYDLAGE 78

Query: 425 IEQSWRKCHQF 457
           + +  R    F
Sbjct: 79  VVELGRGVSSF 89


>08_01_0065 +
           452383-452629,452733-452868,453049-453118,453237-453330,
           453426-453639,453756-453897,454076-454246,454586-454780
          Length = 422

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = +2

Query: 260 TVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVR*GAIDSPPKTPFILGF*CAGEI 427
           T++  + P P  GE  +LI+ KACG+   DL V  G +  P  +P ++G    GE+
Sbjct: 63  TLEDFRMPRPKAGE--LLIKTKACGVCHSDLHVLKGEL--PFSSPCVVGHEITGEV 114


>01_06_0737 +
           31592562-31592786,31593314-31593541,31593981-31594054,
           31594595-31594754,31595979-31596098,31596185-31596293,
           31597447-31597628
          Length = 365

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 281 PEPTVGEGEVLIRVKACGLNFQDLIVR*GAIDS--PPKTPFILGF*CAGEI 427
           P P +  G+VL+R +A  +N  DL +R G   S   P  P I+G   +GE+
Sbjct: 51  PVPDLKPGDVLVRARAVSINPLDLRMRSGYGRSIFEPVLPLIIGRDISGEV 101


>10_08_0795 + 20635038-20635501,20636034-20636335,20636409-20637010
          Length = 455

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 473 LVAHLKIGDIFANFARFHQRIRSPR*KESSVESRWR 366
           L+AHL++GD+   F      +  P  KE + + +WR
Sbjct: 379 LMAHLQLGDVGEQFEFLFGSVPGPESKEDNRDLQWR 414


>03_01_0012 - 101584-101898,102274-102531,102932-103474
          Length = 371

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 299 EGEVLIRVKACGLNFQDLIVR*GAIDSPPKTPFILG 406
           EGE+ I+  A G+NF D+  R G   +P   PF+ G
Sbjct: 73  EGEIRIKNTAIGVNFIDVYYRQGVYSAP--LPFVPG 106


>11_06_0506 - 24380469-24380632,24381737-24383893,24384488-24384541,
            24384543-24384597,24384914-24384916,24385192-24385231,
            24385576-24385632,24388124-24388412,24389764-24389771,
            24390633-24390688,24391207-24391488,24391651-24391811,
            24391887-24392121,24392860-24392943,24393022-24393117,
            24393333-24394055,24396523-24396987
          Length = 1642

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 375  TLHRRLLSSWASNALVKSSKVGENVTNF 458
            +L R + SSW    LVK    G NV NF
Sbjct: 1201 SLLRAMFSSWTCALLVKKGSEGSNVCNF 1228


>10_08_0923 +
           21597593-21597629,21598089-21598135,21598253-21598391,
           21598449-21598562,21599206-21599432,21599578-21599835,
           21600014-21600304,21600766-21600830,21601116-21601299,
           21601857-21601964
          Length = 489

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 299 EGEVLIRVKACGLNFQDLIVR*GAIDSPPKTPFI 400
           EGE+ I+ KA G+N+ D+  R G    P   PF+
Sbjct: 42  EGEIRIKNKAIGVNYVDIYYRTGLHQEP--LPFV 73


>08_01_0901 -
           8873905-8874076,8874674-8874786,8875388-8875522,
           8875661-8875792,8876136-8876301,8877154-8877248,
           8878983-8879104,8879283-8879403,8879556-8879633,
           8879730-8879991,8880196-8880366,8881070-8881710
          Length = 735

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 420 VKSSKVGENVTNFKVGDQVVALPEYRAWADWCLYRPST 533
           V  S+ GEN + +KV D+ + +P++ A A W    P +
Sbjct: 345 VIDSRFGENFSAYKVKDKTI-VPQFDACASWWTQGPDS 381


>12_02_0197 + 15392427-15392617,15392743-15393271
          Length = 239

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 546 GSAYTYWAGTDTSRPKRGTRGEPPLGRPP 460
           GSA    AGT  +RP+ G RG  P  + P
Sbjct: 19  GSAGKETAGTAAARPREGGRGSAPKQQDP 47


>09_04_0641 +
           19172370-19172459,19172539-19172680,19172951-19173039,
           19173096-19173806
          Length = 343

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +2

Query: 251 GFKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVR*GAIDS--PPKTPFILGF*CAGE 424
           G + +K ++ P P+  +GEVLI+++A  +N  D  ++ G +    P K P I     AG+
Sbjct: 25  GAEGLKHVEVPIPSPKKGEVLIKMEAASINPIDWKIQKGMLRPFLPWKFPSIPACDLAGK 84

Query: 425 I 427
           +
Sbjct: 85  V 85


>06_02_0214 + 13141213-13143741
          Length = 842

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 592 VVRGNDNSIQGRHSFGQRVHVLGRYRHQ 509
           V RGN  S QG + F   + +L R RH+
Sbjct: 525 VKRGNPKSQQGLNEFRTEIELLSRLRHR 552


>05_03_0489 - 14662378-14664957
          Length = 859

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 592 VVRGNDNSIQGRHSFGQRVHVLGRYRHQ 509
           + RGN  S QG H F   + +L + RH+
Sbjct: 535 IKRGNPLSEQGVHEFQNEIEMLSKLRHR 562


>04_03_0036 -
           9950353-9950379,9950753-9950791,9951021-9951194,
           9951287-9951415,9951782-9952012,9952655-9952732,
           9953035-9953055,9953790-9953855,9953935-9954015,
           9954148-9954920,9955461-9955654,9956723-9956817,
           9958190-9958219,9958334-9958453,9959185-9959262,
           9959428-9959505,9960459-9960488,9960614-9960739,
           9961239-9961379,9963416-9963532,9963619-9963670,
           9963759-9963890,9964668-9964720,9964816-9964911,
           9965255-9965260,9965416-9965561,9966494-9966629,
           9966885-9967038,9968017-9968154,9968268-9968614
          Length = 1295

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 203 DPTAQGNARRSTYRLRGFKTVKIL 274
           DP A GNA++S Y L G    +IL
Sbjct: 534 DPNAMGNAKQSNYELYGKPRFQIL 557


>01_01_0774 -
           6004040-6004371,6004634-6005215,6005391-6005657,
           6005845-6006163
          Length = 499

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = +3

Query: 435 VGENVTNFKVGDQVVALPEYRAWADWCLYRPSTCTRCPKECLPWMLLSLP 584
           V ++  N    ++ +A   +R W D    R    T C     PW  + LP
Sbjct: 337 VSKHPFNLHTMEEAIATARWRKWGDVDSIREQMETYCRNGLQPWSPIKLP 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,083,322
Number of Sequences: 37544
Number of extensions: 364955
Number of successful extensions: 1074
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)