Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0220
         (607 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)            63   2e-10
SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)                     45   4e-05
SB_36448| Best HMM Match : SH3_2 (HMM E-Value=4.5)                     31   0.96 
SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)               29   2.2  
SB_50200| Best HMM Match : RVT_1 (HMM E-Value=0.044)                   29   2.9  
SB_43329| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_42667| Best HMM Match : Ribosomal_S9 (HMM E-Value=4.6)              27   8.9  

>SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)
          Length = 562

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 32/119 (26%), Positives = 53/119 (44%)
 Frame = +2

Query: 251 GFKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVR*GAIDSPPKTPFILGF*CAGEIE 430
           G   +K+ K   P   +G+V+++V ACG+ F DL+ R G     PK P++ GF C+G +E
Sbjct: 49  GNNKIKVEKYARPKPMQGQVVVKVHACGVTFADLLQRQGHFPLAPKPPYVCGFECSGVVE 108

Query: 431 QSWRKCHQFXXXXXXXXXXXXXXXXXXVSVPAQYVYALPEGMSALDAVVITTNYVVGYL 607
           +   +                        V A+  Y +PE M+  +   I   Y+  +L
Sbjct: 109 ELGEEVTGIDVGARVICLAPYGMWTEYACVDAKMCYVMPEAMTFEEGAAIPITYLTAHL 167


>SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)
          Length = 316

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
 Frame = +2

Query: 251 GFKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVR*GAIDSPPKTPFILGF*CAGEIE 430
           G +++ I   P P + E EVLIRV    LN  D + R G+   PP    ILG   +G +E
Sbjct: 37  GPESMYIGDAPRPKLKETEVLIRVHFTALNRADTLQRKGSYPPPPGESEILGLEVSGIVE 96

Query: 431 QSWRKCH-QFXXXXXXXXXXXXXXXXXXVSVPAQYVYALPEGMSALDAVVITTNYVVGY 604
           +    C+  +                   +V   +V  +P+GMS  DA  I   ++  +
Sbjct: 97  ELGSACNLGWRKGDKVMALVPGGGYAEFAAVQESHVMPIPKGMSQSDAATIPEVWLTSF 155


>SB_36448| Best HMM Match : SH3_2 (HMM E-Value=4.5)
          Length = 132

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 426 SSKVGENVTNFKVGDQVVALPEYRAWADWCLYR 524
           S++  ++ TN KVGD VV   E     DWCL R
Sbjct: 53  SARSAQSETNLKVGDIVVVNVESLHCNDWCLAR 85


>SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)
          Length = 1110

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 301  GRGPDSRESLRPKLPRFDSSLGRHRLSTED 390
            GRG D    +R +LP  DSS    R S ED
Sbjct: 1055 GRGRDKGRQMRTRLPSIDSSRSMGRSSDED 1084


>SB_50200| Best HMM Match : RVT_1 (HMM E-Value=0.044)
          Length = 527

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 287 PTVGEGEVLIRVKACGLN 340
           P V EG V++++KACGL+
Sbjct: 316 PQVDEGSVVVKIKACGLD 333


>SB_43329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 387 FGGESMAP*RTIKSWKFRPQAFTRIRTSPSPT 292
           FG +  +P  TIKSW ++PQ  TR   +P  T
Sbjct: 74  FGIDGTSP-PTIKSWCYKPQTVTRSSKTPVKT 104


>SB_42667| Best HMM Match : Ribosomal_S9 (HMM E-Value=4.6)
          Length = 179

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 310 DLALTNGRLRFFEYLNGLEPPKPVST 233
           +LAL   RLR+F ++   + P PVS+
Sbjct: 122 ELALRKARLRWFRHVERAQAPNPVSS 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,356,830
Number of Sequences: 59808
Number of extensions: 379436
Number of successful extensions: 934
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)