Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0220
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-3|CAB07384.1|  328|Caenorhabditis elegans Hypothetical pr...    32   0.37 
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81570-2|CAB04604.1|  349|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U23147-2|AAC46688.1|  918|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>Z92834-3|CAB07384.1|  328|Caenorhabditis elegans Hypothetical
           protein F39B2.3 protein.
          Length = 328

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 25/114 (21%), Positives = 44/114 (38%)
 Frame = +2

Query: 263 VKILKKPEPTVGEGEVLIRVKACGLNFQDLIVR*GAIDSPPKTPFILGF*CAGEIEQSWR 442
           ++ ++   P + + +VL+R  A G+N  D  +R G     P  P++ G   AG +E    
Sbjct: 24  IEAVESDMPRLEKNQVLVRNYAAGVNPVDTYIRAGQYGKLPNLPYVPGKDGAGFVELVGE 83

Query: 443 KCHQFXXXXXXXXXXXXXXXXXXVSVPAQYVYALPEGMSALDAVVITTNYVVGY 604
                                  V+V     + LPEG+S  +   +   Y+  Y
Sbjct: 84  SVKNVKVGDRVWYGSEADSTAEYVAV--NRPFELPEGVSFEEGASLGVPYLTAY 135


>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
           protein C34F6.1 protein.
          Length = 1043

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +2

Query: 5   PAGSLVRASFAAERYSFRSTR--PYHQND*EYGRRRDSSTGEDPDRKWCY*NTARGNARK 178
           P G      +     SF +T   P   ++    +RRD+  G++   +W + N A+   R 
Sbjct: 208 PNGGCPEDHYCHTGASFSTTACCPLVSSEDRCAQRRDTGEGDELVARWYFDNQAKECRRF 267

Query: 179 IYRGEKG 199
           +Y+G +G
Sbjct: 268 LYKGIRG 274


>Z81570-2|CAB04604.1|  349|Caenorhabditis elegans Hypothetical
           protein K12G11.3 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +2

Query: 263 VKILKKPEPTVGEGEVLIRVKACGLNFQDLIVR*GAIDSPPKTPFILGF*CAGEIEQ 433
           +++ + P P+  + E+L++++  G+   DL V  G +      P + G   AG + Q
Sbjct: 21  LEVRQVPVPSPADDEILVKIEYSGICHSDLHVWLGDLKDMSVCPLVGGHEGAGSVVQ 77


>U23147-2|AAC46688.1|  918|Caenorhabditis elegans Hypothetical
           protein C18H9.3 protein.
          Length = 918

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 310 DLALTNGRLRFFEYLNGLEPPKPV 239
           DL   +G    FEYL  +EPP+P+
Sbjct: 426 DLKKLHGSSTPFEYLEDIEPPRPI 449


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,124,224
Number of Sequences: 27780
Number of extensions: 265744
Number of successful extensions: 684
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)