Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0220
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.4  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    21   7.1  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    21   7.1  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   7.1  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 598 HHVVRGNDNSIQGR 557
           +HV+RGN+N   G+
Sbjct: 622 YHVLRGNENIYSGK 635


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 505 PTGVCTGPVRVRAARRNVCPGCCC 576
           P  VC+ P  V  A++ V    CC
Sbjct: 583 PESVCSLPCEVGQAKKYVAGEQCC 606


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 231 RRAFPWAVGSHPFSPR 184
           RR FP   G  PF+P+
Sbjct: 31  RRPFPTFPGQGPFNPK 46


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 231 RRAFPWAVGSHPFSPR 184
           RR FP   G  PF+P+
Sbjct: 17  RRPFPTFPGQGPFNPK 32


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +1

Query: 517 CTGPVRVRAARRNVCPGCCCHYHELRGGLS 606
           C+G   +R    + C GC    H+ + G++
Sbjct: 22  CSGYPSIRQGTTSYCLGCGDSCHKCKYGIA 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,356
Number of Sequences: 438
Number of extensions: 3451
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)