Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0220
(607 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g21580.1 68417.m03122 oxidoreductase, zinc-binding dehydrogen... 52 2e-07
At5g61510.1 68418.m07718 NADP-dependent oxidoreductase, putative... 36 0.016
At5g63620.2 68418.m07988 oxidoreductase, zinc-binding dehydrogen... 32 0.26
At5g63620.1 68418.m07987 oxidoreductase, zinc-binding dehydrogen... 32 0.26
At3g15090.1 68416.m01908 oxidoreductase, zinc-binding dehydrogen... 29 1.8
At5g64840.1 68418.m08157 ABC transporter family protein 28 5.5
At4g39330.1 68417.m05568 mannitol dehydrogenase, putative nearly... 28 5.5
At2g21890.1 68415.m02601 mannitol dehydrogenase, putative simila... 28 5.5
At2g21730.1 68415.m02585 mannitol dehydrogenase, putative simila... 28 5.5
At3g56460.1 68416.m06279 oxidoreductase, zinc-binding dehydrogen... 27 7.3
At3g51550.1 68416.m05645 protein kinase family protein contains ... 27 7.3
At4g13010.1 68417.m02030 oxidoreductase, zinc-binding dehydrogen... 27 9.6
At1g48060.1 68414.m05358 F-box family protein contains Pfam PF00... 27 9.6
>At4g21580.1 68417.m03122 oxidoreductase, zinc-binding dehydrogenase
family protein Pig3 Homo sapiens, PID:G2754812; contains
Pfam zinc-binding dehydrogenase domain PF00107
Length = 325
Score = 52.4 bits (120), Expect = 2e-07
Identities = 32/96 (33%), Positives = 45/96 (46%)
Frame = +2
Query: 284 EPTVGEGEVLIRVKACGLNFQDLIVR*GAIDSPPKTPFILGF*CAGEIEQSWRKCHQFXX 463
+P V + EVLIRV A LN D + R G + PP + LG C+G IE + ++
Sbjct: 22 DPEVKDDEVLIRVLATALNRADTLQRLGLYNPPPGSSPYLGLECSGTIESVGKGVSRWKV 81
Query: 464 XXXXXXXXXXXXXXXXVSVPAQYVYALPEGMSALDA 571
VSVPA ++ +P G+S DA
Sbjct: 82 GDQVCALLSGGGYAEKVSVPAGQIFPIPAGISLKDA 117
>At5g61510.1 68418.m07718 NADP-dependent oxidoreductase, putative
similar to zeta-crystallin homolog TED2 from Zinnia
elegans [gi:531096]; contains Pfam zinc-binding
dehydrogenase domain PF00107
Length = 406
Score = 36.3 bits (80), Expect = 0.016
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +2
Query: 266 KILKKPEPTVGE---GEVLIRVKACGLNFQDLIVR*GAIDSPPKTPFILGF*CAGEI 427
++LK + VGE GE+ ++ KA GLNF D+ R G + P PF G GE+
Sbjct: 96 EVLKWEDVEVGEPKEGEIRVKNKAIGLNFIDVYFRKG-VYKPASMPFTPGMEAVGEV 151
>At5g63620.2 68418.m07988 oxidoreductase, zinc-binding dehydrogenase
family protein contains PFAM zinc-binding dehydrogenase
domain PF00107
Length = 427
Score = 32.3 bits (70), Expect = 0.26
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 287 PTVGEGEVLIRVKACGLNFQDLIVR*GAIDSPPKTPFILGF*CAGEI 427
P E+LI+ KACG+ DL V G I P +P ++G GE+
Sbjct: 76 PRPKSNEILIKTKACGVCHSDLHVMKGEI--PFASPCVIGHEITGEV 120
>At5g63620.1 68418.m07987 oxidoreductase, zinc-binding dehydrogenase
family protein contains PFAM zinc-binding dehydrogenase
domain PF00107
Length = 427
Score = 32.3 bits (70), Expect = 0.26
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 287 PTVGEGEVLIRVKACGLNFQDLIVR*GAIDSPPKTPFILGF*CAGEI 427
P E+LI+ KACG+ DL V G I P +P ++G GE+
Sbjct: 76 PRPKSNEILIKTKACGVCHSDLHVMKGEI--PFASPCVIGHEITGEV 120
>At3g15090.1 68416.m01908 oxidoreductase, zinc-binding dehydrogenase
family protein low similarity to NOGO-interacting
mitochondrial protein from Mus musculus [gi:14522884];
contains Pfam profile: PF00107 zinc-binding
dehydrogenases
Length = 366
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 281 PEPTVGEGEVLIRVKACGLNFQDLIVR*GAIDS--PPKTPFILGF*CAGEI 427
P P + EVL++ KA +N D +R G S P P I+G +GE+
Sbjct: 53 PVPNLNPNEVLVKAKAVSVNPLDCRIRAGYGRSVFQPHLPIIVGRDVSGEV 103
>At5g64840.1 68418.m08157 ABC transporter family protein
Length = 692
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 354 IKSWKFRPQAFTRIRTSPSPTVGSGFLSILTVLNPR 247
+ S R FT +RTSP P S F+ I ++ NPR
Sbjct: 7 LHSLDLRSTFFTGLRTSPIP---SNFIKISSISNPR 39
>At4g39330.1 68417.m05568 mannitol dehydrogenase, putative nearly
identical to SP|P42734, probable mannitol dehydrogenase
Length = 360
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3
Query: 426 SSKVGENVTNFKVGDQV 476
++KVG+NVT FK GD+V
Sbjct: 78 ATKVGKNVTKFKEGDRV 94
>At2g21890.1 68415.m02601 mannitol dehydrogenase, putative similar
to ELI3-2 (SP|Q02972), sinapyl alcohol dehydrogenase
(Populus tremuloides) (gi:14279694); contains Pfam
zinc-binding dehydrogenase domain PF00107
Length = 375
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3
Query: 426 SSKVGENVTNFKVGDQV 476
++KVG+NVT FK GD+V
Sbjct: 72 ATKVGKNVTKFKEGDRV 88
>At2g21730.1 68415.m02585 mannitol dehydrogenase, putative similar
to ELI3-2 (SP|Q02972), sinapyl alcohol dehydrogenase
(Populus tremuloides) (gi:14279694); contains Pfam
zinc-binding dehydrogenase domain PF00107
Length = 376
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3
Query: 426 SSKVGENVTNFKVGDQV 476
++KVG+NVT FK GD+V
Sbjct: 72 ATKVGKNVTKFKEGDRV 88
>At3g56460.1 68416.m06279 oxidoreductase, zinc-binding dehydrogenase
family protein low similarity to probable NADP-dependent
oxidoreductase (zeta-crystallin homolog) P1
[SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
zeta-crystallin / quinone reductase (NADPH) - Mus
musculus, PIR:A54932; contains Pfam profile PF00107:
oxidoreductase, zinc-binding dehydrogenase family
Length = 348
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 435 VGENVTNFKVGDQVVALPEYRAWADWCLYRPSTCTRCPKEC 557
+G VT F+VGD+V + + ++A + + S P+ C
Sbjct: 83 IGPAVTKFRVGDRVCSFADLGSFAQFIVADQSRLFLVPERC 123
>At3g51550.1 68416.m05645 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 895
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 592 VVRGNDNSIQGRHSFGQRVHVLGRYRHQ 509
+ RGN S QG H F + +L + RH+
Sbjct: 564 IKRGNPMSEQGVHEFQTEIEMLSKLRHR 591
>At4g13010.1 68417.m02030 oxidoreductase, zinc-binding dehydrogenase
family protein low similarity to probable NADP-dependent
oxidoreductase (zeta-crystallin homolog) P1
[SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430];
contains Pfam profile PF00107: oxidoreductase,
zinc-binding dehydrogenase family
Length = 329
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 432 KVGENVTNFKVGDQVVAL 485
+VG V NFK GD+VVA+
Sbjct: 79 EVGSGVKNFKAGDKVVAV 96
>At1g48060.1 68414.m05358 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 353
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 2 LPAGSLVRASFAAERYSFRSTRPYHQND*E 91
LPA S+VR S A+ +S +T PY N E
Sbjct: 26 LPAKSVVRFSCVAKHWSSITTAPYFTNSFE 55
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,792,413
Number of Sequences: 28952
Number of extensions: 261468
Number of successful extensions: 754
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -