Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0219
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    28   1.3  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.9  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    25   8.9  

>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 89  DTTATDSLPTASEPTASQPTASEP-TASQPTAS 184
           D+T  DS P+    +  QPT S P T S P+ S
Sbjct: 294 DSTTIDSTPSTIATSTLQPTTSSPITTSAPSLS 326


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 101 TDSLPTASEPTASQPTASEPTASQP 175
           T+  P A  P+A    A+ P ASQP
Sbjct: 325 TNGRPVAPRPSAGAGGANPPAASQP 349


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 290 VVRGLNVSVDSGPWMS 243
           V+ G  +SVDS PW+S
Sbjct: 625 VISGSRLSVDSSPWIS 640


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 927,171
Number of Sequences: 5004
Number of extensions: 7416
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)