Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0219
(623 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39876| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.047
SB_51569| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_52216| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_24425| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_8961| Best HMM Match : NUDE_C (HMM E-Value=5.6) 30 1.3
SB_23899| Best HMM Match : TNFR_c6 (HMM E-Value=7.1e-09) 29 2.3
SB_35625| Best HMM Match : DUF296 (HMM E-Value=0.0053) 29 3.1
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066) 28 7.1
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8) 27 9.4
>SB_39876| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 35.1 bits (77), Expect = 0.047
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +2
Query: 101 TDSLPTASEPTASQPTASEPTASQPTAS 184
T LPT +PT PT EPT +PT S
Sbjct: 629 TTELPTTKQPTTELPTTQEPTTERPTPS 656
Score = 32.3 bits (70), Expect = 0.33
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 89 DTTATDSLPTASEPTASQPTASEPTASQPT 178
D T + PT+ +P QPT +PT PT
Sbjct: 595 DIAVTQAPPTSQQPITEQPTTKQPTTELPT 624
Score = 31.5 bits (68), Expect = 0.57
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 101 TDSLPTASEPTASQPTASEPTASQPT 178
T LPT +PT PT +PT PT
Sbjct: 619 TTELPTTKQPTTELPTTKQPTTELPT 644
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 101 TDSLPTASEPTASQPTASEPTASQPT 178
T P +PT QPT PT QPT
Sbjct: 604 TSQQPITEQPTTKQPTTELPTTKQPT 629
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +2
Query: 101 TDSLPTASEPTASQPTASEPTASQPT 178
T PT PT QPT PT QPT
Sbjct: 614 TTKQPTTELPTTKQPTTELPTTKQPT 639
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 98 ATDSLPTASEPTASQPTASEPTASQPT 178
A D T + PT+ QP +PT QPT
Sbjct: 593 ACDIAVTQAPPTSQQPITEQPTTKQPT 619
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 101 TDSLPTASEPTASQPTASEPTASQPT 178
T PT PT QPT PT +PT
Sbjct: 624 TTKQPTTELPTTKQPTTELPTTQEPT 649
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 113 PTASEPTASQPTASEPTASQPT 178
PT +PT PT +PT PT
Sbjct: 613 PTTKQPTTELPTTKQPTTELPT 634
>SB_51569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 101 TDSLPTASEPTASQPTASEPTASQPTA 181
T +PT PTA T PTA PTA
Sbjct: 602 TTQMPTTQSPTAQMSTTQSPTAQSPTA 628
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 101 TDSLPTASEPTASQPTASEPTASQPTA 181
T LPT PT PTA T PTA
Sbjct: 597 TTQLPTTQMPTTQSPTAQMSTTQSPTA 623
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 101 TDSLPTASEPTASQPTASEPTASQPTA 181
T LPTA T PT PT PTA
Sbjct: 643 TTQLPTAQMSTTQSPTTQLPTTQSPTA 669
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 101 TDSLPTASEPTASQPTASEPTASQPTA 181
T + T PT PT PTA PTA
Sbjct: 648 TAQMSTTQSPTTQLPTTQSPTAQSPTA 674
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 101 TDSLPTASEPTASQPTASEPTASQPT 178
T LPT PT PT PTA T
Sbjct: 592 TTQLPTTQLPTTQMPTTQSPTAQMST 617
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 98 ATDSLPTASEPTASQPTASEPTASQPT 178
+T PT PT PTA PTA T
Sbjct: 652 STTQSPTTQLPTTQSPTAQSPTAQMST 678
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 31.9 bits (69), Expect = 0.43
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = +2
Query: 92 TTATDSLPTASEPTASQPTASEPTASQPT 178
T AT PT PTA PT PTA PT
Sbjct: 95 TPATTPTPTKPTPTAHTPTTPTPTAHTPT 123
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 86 PDTTATDSLPTASEPTASQPTASEPTASQPT 178
P TT T + PT + T ++P+ + PT++ PT
Sbjct: 20 PQTTPTPTKPTPTTHTPTKPSPTTPTSTAPT 50
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 95 TATDSLPTASEPTASQPTASEPTASQP 175
T T PTA PT PTA PT P
Sbjct: 101 TPTKPTPTAHTPTTPTPTAHTPTKPTP 127
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +2
Query: 95 TATDSLPTASEPTASQPTASEPTASQPTA 181
T T PTA PT P PT PTA
Sbjct: 111 TPTTPTPTAHTPTKPTPKTPTPTTPTPTA 139
>SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 31.5 bits (68), Expect = 0.57
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 89 DTTATDSLPTASEPTASQPTASEPTASQP 175
DTT T S P + PTAS P + P A+ P
Sbjct: 207 DTTLTASSPVETTPTASPPVKTTPLAATP 235
Score = 31.1 bits (67), Expect = 0.76
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +2
Query: 89 DTTATDSLPTASEPTASQPTASEPTASQP 175
DTT T S P + TAS P + PTAS P
Sbjct: 197 DTTLTASSPVDTTLTASSPVETTPTASPP 225
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 92 TTATDSLPTASEPTASQPTASEPTASQPTAS 184
+T D+ TAS P + TAS P + PTAS
Sbjct: 193 STPVDTTLTASSPVDTTLTASSPVETTPTAS 223
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 92 TTATDSLPTASEPTASQPTASEPTASQPTA 181
++ ++ PTAS P + P A+ P + PTA
Sbjct: 213 SSPVETTPTASPPVKTTPLAATPVYATPTA 242
>SB_52216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +2
Query: 113 PTASEPTASQPTASEPTASQPTA 181
PTA PTA++PTA PTA PTA
Sbjct: 941 PTAYCPTANRPTAYCPTAYLPTA 963
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +2
Query: 113 PTASEPTASQPTASEPTASQPTA 181
PTA+ PTA PTA PTA PTA
Sbjct: 946 PTANRPTAYCPTAYLPTAYCPTA 968
>SB_24425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 947
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 101 TDSLPTASEPTASQPTASEPT-ASQPTAS 184
+D P AS PT SQ + SEPT S+P +S
Sbjct: 414 SDPAPGASSPTTSQSSVSEPTPTSKPKSS 442
>SB_8961| Best HMM Match : NUDE_C (HMM E-Value=5.6)
Length = 298
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 101 TDSLPTASEPTASQPTASEPT-ASQPTAS 184
+D P AS PT SQ + SEPT S+P +S
Sbjct: 78 SDPAPGASSPTTSQSSVSEPTPTSKPKSS 106
>SB_23899| Best HMM Match : TNFR_c6 (HMM E-Value=7.1e-09)
Length = 533
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +2
Query: 86 PDTTA-TDSLP-TASEPTASQPTASEPTASQPTAS 184
P+TT T ++P T+ EPT + T++E T+SQ T S
Sbjct: 218 PETTPRTPNVPPTSPEPTTRRSTSTESTSSQSTPS 252
>SB_35625| Best HMM Match : DUF296 (HMM E-Value=0.0053)
Length = 885
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = -3
Query: 180 AVGCDAVGSEAVGCEAVGSEAVGNESVAVVS 88
AVG AVG+ AVG AVG AVG +V V+
Sbjct: 204 AVGAVAVGAIAVGIVAVGVVAVGAIAVGFVA 234
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 86 PDTTATDSLPTASEPTASQPTASEP-TASQPTAS 184
P+TT+T ASE TA+ T ++P T P AS
Sbjct: 967 PETTSTPGTLAASETTAAPETTAKPETTETPAAS 1000
>SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066)
Length = 361
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = +2
Query: 107 SLPTASEPTASQPTASEPTASQPTA 181
S PTA P S PTA P S PTA
Sbjct: 56 SPPTAVHPCHSPPTAVRPCHSPPTA 80
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +2
Query: 86 PDTT--ATDSLPTASEPTASQPTASE-PTASQPT 178
P TT T +LP+ +PT +Q T + P+ QPT
Sbjct: 235 PTTTQQTTTTLPSTKQPTTTQQTTTTLPSTKQPT 268
>SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)
Length = 336
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 110 LPTASEPTASQPTASEPTASQPT 178
LPT++ PT + P+ S T S PT
Sbjct: 236 LPTSATPTGTTPSVSPATYSSPT 258
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,573,049
Number of Sequences: 59808
Number of extensions: 65996
Number of successful extensions: 689
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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