Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0219
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69295.1 68414.m07947 beta-1,3-glucanase-related low similari...    31   0.82 

>At1g69295.1 68414.m07947 beta-1,3-glucanase-related low similarity
           to elicitor inducible beta-1,3-glucanase NtEIG-E76
           [Nicotiana tabacum] GI:11071974
          Length = 222

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 95  TATDSLPTASEPTASQPTASEPTASQPTA 181
           T T   PT   PT   PT   PT+  PT+
Sbjct: 121 TPTSGTPTTGTPTTGTPTTGTPTSGTPTS 149



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 95  TATDSLPTASEPTASQPTASEPTASQPTA 181
           T T   PT+  PT   PT   PT   PT+
Sbjct: 116 TPTTGTPTSGTPTTGTPTTGTPTTGTPTS 144



 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 95  TATDSLPTASEPTASQPTASEPTASQPT 178
           T T   PT   PT+  PT   PT   PT
Sbjct: 111 TPTTGTPTTGTPTSGTPTTGTPTTGTPT 138



 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 95  TATDSLPTASEPTASQPTASEPTASQPT 178
           +++   PT   PT   PT+  PT   PT
Sbjct: 106 SSSSGTPTTGTPTTGTPTSGTPTTGTPT 133



 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 95  TATDSLPTASEPTASQPTASEPTASQP 175
           T T   PT   PT   PT+  PT+  P
Sbjct: 126 TPTTGTPTTGTPTTGTPTSGTPTSGFP 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,187,749
Number of Sequences: 28952
Number of extensions: 43642
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)