Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0218
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    43   3e-05
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    42   9e-05
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    27   2.8  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    26   3.8  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   6.6  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   8.7  

>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 19/28 (67%), Positives = 23/28 (82%)
 Frame = -1

Query: 465 LELCSVACNKNTVPGDISALNPSGIRLG 382
           LEL +++ NKNTVPGD SAL P G+RLG
Sbjct: 368 LELVNISANKNTVPGDKSALIPRGLRLG 395


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 41.5 bits (93), Expect = 9e-05
 Identities = 18/28 (64%), Positives = 22/28 (78%)
 Frame = -1

Query: 465 LELCSVACNKNTVPGDISALNPSGIRLG 382
           LEL ++  NKNTVP D SA +PSGIR+G
Sbjct: 362 LELINIVTNKNTVPSDKSAFSPSGIRVG 389


>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 382

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 416 MSPGTVFLLQATLQSSRGGPVPNSP 490
           M PGT+ +  AT    + G  PN+P
Sbjct: 51  MIPGTLLIADATFVGEKSGGFPNNP 75


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 196 IWRMRCVKERWAHLVNLCDVKERDVKMQR*VRVLFDEAFSDLMRANY 336
           +W+   + ERW++ VN C  +  D    + + +  DE     M  NY
Sbjct: 71  LWKDENIPERWSNTVNSCRRQHPDENGWQFI-LWTDEKIMSFMNENY 116


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = +1

Query: 103 LENTHTYTMPYL-----NHSTSQYF*IFTLLSKGTMIWRM 207
           LENTH++ +P L     NH+  Q   +  LL +G  + R+
Sbjct: 411 LENTHSHVLPILVACQTNHAVDQI--LIRLLHQGASVMRL 448


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 404 LSALMSPGTVFLLQATLQSSRGGPVPNSPYSESYYIHWPSFY 529
           +SA M+P  +  L   L         +SP+   +Y+  PSFY
Sbjct: 459 MSANMAPSVMKCLPVCLILILANNELHSPFPAEFYVLLPSFY 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,301,284
Number of Sequences: 5004
Number of extensions: 42506
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)