Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0218
         (615 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0028 - 12437332-12437576,12438436-12438537,12438619-124390...    40   0.002
11_04_0205 + 14860857-14861534,14862585-14862975,14863069-148631...    39   0.003
01_06_1521 + 37956131-37957204,37958560-37958962,37959370-379594...    33   0.18 
03_05_1066 + 30098780-30098866,30099139-30099225,30099318-300994...    32   0.42 
09_02_0036 + 3217163-3217584,3217752-3218322                           31   0.96 
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    29   3.9  
11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371     28   6.8  

>12_02_0028 -
           12437332-12437576,12438436-12438537,12438619-12439009,
           12439996-12440532
          Length = 424

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = -1

Query: 462 ELCSVACNKNTVPGDISALNPSGIRLG 382
           +LCS+  NKN V GD SA++P G+R+G
Sbjct: 318 DLCSITLNKNAVFGDSSAMSPGGVRIG 344


>11_04_0205 +
           14860857-14861534,14862585-14862975,14863069-14863170,
           14863438-14863682
          Length = 471

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = -1

Query: 462 ELCSVACNKNTVPGDISALNPSGIRLG 382
           +LCS+  NKN V GD SAL P G+R+G
Sbjct: 365 DLCSITLNKNAVFGDSSALAPGGVRIG 391


>01_06_1521 +
           37956131-37957204,37958560-37958962,37959370-37959471,
           37959569-37959792
          Length = 600

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = -1

Query: 462 ELCSVACNKNTVPGDISALNPSGIRLGQFSSLTL*RLRQTERVIS-----AHQIAKGFVK 298
           E C ++ NK  + GD  +++P G+R+G  +  T   L     VI+     A QIA   +K
Sbjct: 501 EACHISINKMPIYGDNGSISPGGVRIGTPAMTTRGCLEDDFEVIADFLIRATQIASNLMK 560

Query: 297 QNAYLALHF 271
           ++  +   F
Sbjct: 561 EHGKMQKEF 569


>03_05_1066 +
           30098780-30098866,30099139-30099225,30099318-30099439,
           30099580-30099656,30100135-30100259,30100497-30100589,
           30100840-30100932,30101016-30101213,30101337-30101441,
           30101535-30101600,30101808-30101885,30102144-30102233,
           30102325-30102448,30102590-30102741
          Length = 498

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = -1

Query: 465 LELCSVACNKNTVPGDISAL 406
           LE   +A NKNTVPGD+SA+
Sbjct: 388 LENVHIAANKNTVPGDVSAM 407


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 497 ESYYIHWPSFYNVV-TGKTLALPNLIALQH 583
           ES    W  F N+V +G TL++PN + LQH
Sbjct: 67  ESISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 494 SESYYIHWPSFYNVV-TGKTLALPNLIALQH 583
           +ES    W  F N+V +G TL+LP  + LQH
Sbjct: 126 NESIGAAWSRFTNLVQSGPTLSLPEYVLLQH 156


>11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371
          Length = 680

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 497 ESYYIHWPSFYNVV-TGKTLALPNLIALQH 583
           ES    W  F N+V +G TL+LP  + LQH
Sbjct: 408 ESIGAAWSRFTNLVQSGLTLSLPEYVLLQH 437


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,650,324
Number of Sequences: 37544
Number of extensions: 266881
Number of successful extensions: 644
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)