Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0218
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-13|AAB53830.1|  484|Caenorhabditis elegans Maternal effec...    49   2e-06
U00048-12|AAL27228.1|  507|Caenorhabditis elegans Maternal effec...    49   2e-06
Z71266-6|CAA95844.1|  184|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z81544-3|CAB04435.1|  255|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    27   8.1  
U42844-9|AAB53821.1|  315|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U00048-13|AAB53830.1|  484|Caenorhabditis elegans Maternal effect
           lethal protein32, isoform a protein.
          Length = 484

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 20/28 (71%), Positives = 23/28 (82%)
 Frame = -1

Query: 465 LELCSVACNKNTVPGDISALNPSGIRLG 382
           L+L  +ACNKNT PGD+SAL P GIRLG
Sbjct: 379 LDLAHIACNKNTCPGDVSALRPGGIRLG 406


>U00048-12|AAL27228.1|  507|Caenorhabditis elegans Maternal effect
           lethal protein32, isoform b protein.
          Length = 507

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 20/28 (71%), Positives = 23/28 (82%)
 Frame = -1

Query: 465 LELCSVACNKNTVPGDISALNPSGIRLG 382
           L+L  +ACNKNT PGD+SAL P GIRLG
Sbjct: 402 LDLAHIACNKNTCPGDVSALRPGGIRLG 429


>Z71266-6|CAA95844.1|  184|Caenorhabditis elegans Hypothetical
           protein R06C7.6 protein.
          Length = 184

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 220 ERWAHLVNLCDVKERDVKMQR*VRVLFDEAFSDLMRANYPFCLTK 354
           E W   +NL ++ +RD K +R  RV+  E +  L+ ++    L+K
Sbjct: 91  EYWEKTMNLAEMAQRDTKFRRKFRVIPGENYISLLSSDRSHMLSK 135


>Z81544-3|CAB04435.1|  255|Caenorhabditis elegans Hypothetical
           protein F49C5.7 protein.
          Length = 255

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 440 TRTPCPATLARSTPAASDSVSSHP*LSKGFVK 345
           T TP P++ + +TP A  S ++ P ++  F++
Sbjct: 57  TATPSPSSASSTTPTAQSSTATSPAMTSPFIQ 88


>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
           protein F40G12.3 protein.
          Length = 1099

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 88  FSGIIQYFNTHSLGHSLN*RLRQT 17
           F  ++ Y NTHS+GH  N R  ++
Sbjct: 138 FPEVVNYLNTHSVGHVKNWRTAES 161


>U42844-9|AAB53821.1|  315|Caenorhabditis elegans Hypothetical
           protein C08A9.9 protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 605 RQLAKGGCAARRLSWVTPGFSQSRRCKTTASECNTTHY 492
           +Q A    A R+ + VTP  S++ R    AS    THY
Sbjct: 191 QQSASSPPAVRQSAIVTPSASENNRTSNAASNGKQTHY 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,590,532
Number of Sequences: 27780
Number of extensions: 237830
Number of successful extensions: 653
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)