Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0218
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26780.3 68418.m03195 glycine hydroxymethyltransferase, putat...    46   3e-05
At5g26780.2 68418.m03194 glycine hydroxymethyltransferase, putat...    46   3e-05
At5g26780.1 68418.m03193 glycine hydroxymethyltransferase, putat...    46   3e-05
At4g32520.1 68417.m04629 glycine hydroxymethyltransferase, putat...    44   1e-04
At4g37930.1 68417.m05363 glycine hydroxymethyltransferase / seri...    43   1e-04
At4g13930.1 68417.m02156 glycine hydroxymethyltransferase, putat...    39   0.002
At4g13890.1 68417.m02152 glycine hydroxymethyltransferase, putat...    35   0.049
At1g36370.1 68414.m04518 glycine hydroxymethyltransferase, putat...    31   0.46 
At4g28650.1 68417.m04095 leucine-rich repeat transmembrane prote...    29   3.2  
At3g47990.1 68416.m05232 zinc finger (C3HC4-type RING finger) fa...    27   7.5  
At1g27020.1 68414.m03294 expressed protein                             27   7.5  
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    27   9.9  
At4g14096.1 68417.m02176 F-box family protein contains F-box dom...    27   9.9  
At1g11170.1 68414.m01280 expressed protein contains Pfam profile...    27   9.9  

>At5g26780.3 68418.m03195 glycine hydroxymethyltransferase, putative
           / serine hydroxymethyltransferase, putative /
           serine/threonine aldolase, putative strong similarity to
           SP|P50433 Serine hydroxymethyltransferase, mitochondrial
           precursor (EC 2.1.2.1) (Serine methylase) (Glycine
           hydroxymethyltransferase) (SHMT) {Solanum tuberosum};
           contains Pfam profile PF00464: serine
           hydroxymethyltransferase
          Length = 533

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 19/28 (67%), Positives = 23/28 (82%)
 Frame = -1

Query: 465 LELCSVACNKNTVPGDISALNPSGIRLG 382
           LEL  +A NKNTVPGD+SA+ P GIR+G
Sbjct: 421 LELVHIAANKNTVPGDVSAMVPGGIRMG 448


>At5g26780.2 68418.m03194 glycine hydroxymethyltransferase, putative
           / serine hydroxymethyltransferase, putative /
           serine/threonine aldolase, putative strong similarity to
           SP|P50433 Serine hydroxymethyltransferase, mitochondrial
           precursor (EC 2.1.2.1) (Serine methylase) (Glycine
           hydroxymethyltransferase) (SHMT) {Solanum tuberosum};
           contains Pfam profile PF00464: serine
           hydroxymethyltransferase
          Length = 533

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 19/28 (67%), Positives = 23/28 (82%)
 Frame = -1

Query: 465 LELCSVACNKNTVPGDISALNPSGIRLG 382
           LEL  +A NKNTVPGD+SA+ P GIR+G
Sbjct: 421 LELVHIAANKNTVPGDVSAMVPGGIRMG 448


>At5g26780.1 68418.m03193 glycine hydroxymethyltransferase, putative
           / serine hydroxymethyltransferase, putative /
           serine/threonine aldolase, putative strong similarity to
           SP|P50433 Serine hydroxymethyltransferase, mitochondrial
           precursor (EC 2.1.2.1) (Serine methylase) (Glycine
           hydroxymethyltransferase) (SHMT) {Solanum tuberosum};
           contains Pfam profile PF00464: serine
           hydroxymethyltransferase
          Length = 517

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 19/28 (67%), Positives = 23/28 (82%)
 Frame = -1

Query: 465 LELCSVACNKNTVPGDISALNPSGIRLG 382
           LEL  +A NKNTVPGD+SA+ P GIR+G
Sbjct: 405 LELVHIAANKNTVPGDVSAMVPGGIRMG 432


>At4g32520.1 68417.m04629 glycine hydroxymethyltransferase, putative
           / serine hydroxymethyltransferase, putative /
           serine/threonine aldolase, putative similar to serine
           hydroxymethyltransferase [Chlamydomonas reinhardtii]
           GI:17066746; contains Pfam profile PF00464: serine
           hydroxymethyltransferase
          Length = 529

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 23/53 (43%), Positives = 34/53 (64%)
 Frame = -1

Query: 465 LELCSVACNKNTVPGDISALNPSGIRLGQFSSLTL*RLRQTERVISAHQIAKG 307
           L++ S+  NKN+VPGD SAL P GIR+G   ++T   L + + V+ A  I +G
Sbjct: 425 LDMASITLNKNSVPGDKSALVPGGIRIGS-PAMTTRGLSEKDFVVVADFIKEG 476


>At4g37930.1 68417.m05363 glycine hydroxymethyltransferase / serine
           hydroxymethyltransferase / serine/threonine aldolase
           (SHM1) identical to serine hydroxymethyl transferase
           [Arabidopsis thaliana] GI:6899945
          Length = 517

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 18/28 (64%), Positives = 22/28 (78%)
 Frame = -1

Query: 465 LELCSVACNKNTVPGDISALNPSGIRLG 382
           LE   +A NKNTVPGD+SA+ P GIR+G
Sbjct: 405 LEAVHIASNKNTVPGDVSAMVPGGIRMG 432


>At4g13930.1 68417.m02156 glycine hydroxymethyltransferase, putative
           / serine hydroxymethyltransferase, putative /
           serine/threonine aldolase, putative similar to serine
           hydroxymethyltransferase [Chlamydomonas reinhardtii]
           GI:17066746; contains Pfam profile PF00464: serine
           hydroxymethyltransferase
          Length = 471

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = -1

Query: 462 ELCSVACNKNTVPGDISALNPSGIRLG 382
           +LCS+  NKN V GD SAL P G+R+G
Sbjct: 365 DLCSITLNKNAVFGDSSALAPGGVRIG 391


>At4g13890.1 68417.m02152 glycine hydroxymethyltransferase, putative
           / serine hydroxymethyltransferase, putative /
           serine/threonine aldolase, putative similar to serine
           hydroxymethyltransferase [Chlamydomonas reinhardtii]
           GI:17066746; contains Pfam profile PF00464: serine
           hydroxymethyltransferase
          Length = 470

 Score = 34.7 bits (76), Expect = 0.049
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 462 ELCSVACNKNTVPGDISALNPSGIRLG 382
           ELC +  N+N V GD S L P G+R+G
Sbjct: 365 ELCYITLNRNAVFGDTSFLAPGGVRIG 391


>At1g36370.1 68414.m04518 glycine hydroxymethyltransferase, putative
           / serine hydroxymethyltransferase, putative /
           serine/threonine aldolase, putative similar to serine
           hydroxymethyltransferase [Chlamydomonas reinhardtii]
           GI:17066746; contains Pfam profile PF00464: serine
           hydroxymethyltransferase
          Length = 598

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 462 ELCSVACNKNTVPGDISALNPSGIRLG 382
           E+C +  NK  + GD   ++P G+R+G
Sbjct: 496 EMCHITLNKTAIFGDNGTISPGGVRIG 522


>At4g28650.1 68417.m04095 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase 5,
           Arabidopsis thaliana, PIR1:S27756
          Length = 1013

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = -1

Query: 483 LGTGPPLELCSVACNKNTVP----GDISALNPSGIR 388
           +GT P LEL +V+ NK T P    G +  +NP  +R
Sbjct: 568 IGTSPALELLNVSYNKLTGPVPINGFLKTINPDDLR 603


>At3g47990.1 68416.m05232 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 358

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 383 PSLMPLGLSALMSPGTVFLLQATLQSSRGGPVPNSPYSESYYIHWPSFYNVV 538
           P L    LS L S GT    Q   ++S    + + P SESY++   S  + V
Sbjct: 281 PDLDLSALSNLQSSGTEQHSQVNTETSEARYIRSQPQSESYFLRVQSLIHPV 332


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 541 WENPGVTQLNRLAAHPPFASW 603
           WE P  T  N+LA    FA+W
Sbjct: 163 WEKPTSTDFNQLAKESEFAAW 183


>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein weak similarity to
           CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
           profile PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 837

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 22/77 (28%), Positives = 39/77 (50%)
 Frame = -2

Query: 440 TRTPCPATLARSTPAASDSVSSHP*LSKGFVKQNG*LARIRSLKASSNRTRT*RCILTSR 261
           +R+P    +ARS   +    +S   L +G ++++   +  RS   SS R+ +   I  SR
Sbjct: 485 SRSPVRGRIARSPSRSPVRSASRGSLGRGPLRRSSRRSPSRSPVRSSRRSLSRSPIQLSR 544

Query: 260 SFTSHKLTR*AQRSLTQ 210
              S   TR ++RSL++
Sbjct: 545 RSLSRSPTRLSRRSLSR 561


>At4g14096.1 68417.m02176 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 468

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = -3

Query: 238 LDEPNAP*RNAFAKS*CLSIAV*KFRSIEMSSDSDMALYKYGYFLTISINFSGIIQYFNT 59
           L +P    R+  A S    I + KF   E+S D +    +  YFL    N   +I Y+NT
Sbjct: 363 LCKPREEIRSCLASSPVKVIKILKFG--EISDDMEKQREQIKYFLETMPNLEKMILYYNT 420

Query: 58  HSL 50
            S+
Sbjct: 421 TSV 423


>At1g11170.1 68414.m01280 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 438

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -2

Query: 347 KQNG*LARIRSLKASSNRTRT*RCILTSRSFTSHK 243
           K NG   R+R   +SS+R +  R   TSR+ T+HK
Sbjct: 404 KSNGNNRRLRRGSSSSHRVKHKRSQETSRTTTTHK 438


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,874,407
Number of Sequences: 28952
Number of extensions: 217302
Number of successful extensions: 518
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)